Pictorial database of 3D structures in the Protein Data Bank
PDBSum
Content
Description
Overview of the structures contained within the Protein Data Bank.
Data types captured
Protein structures
Organisms
all
Contact
Research center
European Bioinformatics Institute (EBI)
Authors
Roman Laskowski & al. (1997)
Primary citation
PMID 9433130
Access
Website
www.ebi.ac.uk/pdbsum/
Miscellaneous
Bookmarkable entities
yes
PDBsum is a database that provides an overview of the contents of each 3D macromolecular structure deposited in the Protein Data Bank (PDB).[1][2][3][4]
^Laskowski RA, Hutchinson EG, Michie AD, Wallace AC, Jones ML, Thornton JM (Dec 1997). "PDBsum: a Web-based database of summaries and analyses of all PDB structures". Trends in Biochemical Sciences. 22 (12): 488–90. doi:10.1016/S0968-0004(97)01140-7. PMID 9433130.
^Laskowski RA (Jan 2001). "PDBsum: summaries and analyses of PDB structures". Nucleic Acids Research. 29 (1): 221–2. doi:10.1093/nar/29.1.221. PMC 29784. PMID 11125097.
^Laskowski RA, Chistyakov VV, Thornton JM (Jan 2005). "PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids". Nucleic Acids Research. 33 (Database issue): D266-8. doi:10.1093/nar/gki001. PMC 539955. PMID 15608193.
^Laskowski RA (Jan 2009). "PDBsum new things". Nucleic Acids Research. 37 (Database issue): D355-9. doi:10.1093/nar/gkn860. PMC 2686501. PMID 18996896.
PDBsum is a database that provides an overview of the contents of each 3D macromolecular structure deposited in the Protein Data Bank (PDB). The original...
the PDB. For example, SCOP and CATH classify protein structures, while PDBsum provides a graphic overview of PDB entries using information from other...
it as easy as possible to find and view a macromolecule within the PDB PDBsum provides an overview macromolecular structures in the PDB, giving schematic...
Protein Data Bank file input. The LIGPLOT is used to generate images for the PDBsum resource that summarises molecular structure. Wallace AC, Laskowski RA,...
different proteins with known three-dimensional structure are provided by PDBsum (an example). Circuit topology Membrane topology Protein folding B. Scalvini...
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