Open protein structure annotation network information

The Open Protein Structure Annotation Network (TOPSAN) is a wiki designed to collect, share and distribute information about protein three-dimensional...

a database of annotated protein models calculated by homology modeling TOPSAN the Open Protein Structure Annotation Network — a wiki designed to collect...

developed a wiki-based approach namely Open protein structure annotation network (TOPSAN) for annotating protein structures emerging from high-throughput structural...

In molecular biology and genetics, DNA annotation or genome annotation is the process of describing the structure and function of the components of a genome...

any defined owner or leader, and wikis have little inherent structure, allowing structure to emerge according to the needs of the users. Wiki engines...

selected proteins from the PDB) Proteopedia – Life in 3D: rotatable, zoomable 3D model with wiki annotations for every known protein molecular structure. UniProt...

PSI:Biology-Materials Repository Open Protein Structure Annotation Network (TOPSAN), a wiki for annotation of protein structures determined by the PSI PSI Assessment...

Critical Assessment of Structure Prediction (CASP), sometimes called Critical Assessment of Protein Structure Prediction, is a community-wide, worldwide...

bioinformatics algorithms had to be programmed by hand; for problems such as protein structure prediction, this proved difficult. Machine learning techniques, such...

J (January 2018). "SubtiWiki in 2018: from genes and proteins to functional network annotation of the model organism Bacillus subtilis". Nucleic Acids...

design, drug discovery, protein structure alignment, protein structure prediction, prediction of gene expression and protein–protein interactions, genome-wide...

The Biomolecular Object Network Databank is a bioinformatics databank containing information on small molecule structures and interactions. The databank...

different aspects of bacterial and archaeal biodiversity (BacDive), protein structures (ProteinPlus) and to comprehensive enzyme information (BRENDA). de.NBI...

Nakai, Kenta (1 December 2023). "HyGAnno: Hybrid graph neural network-based cell type annotation for single-cell ATAC sequencing data". doi:10.1101/2023.11...

covers the exploration of proteomes from the overall level of protein composition, structure, and activity, and is an important component of functional genomics...

manipulating sequences, protein structures, file parsers, Common Object Request Broker Architecture (CORBA) interoperability, Distributed Annotation System (DAS)...

knowledge-based annotation of protein expression levels. The Brain section provides comprehensive spatial profiling of the brain, including overview of protein expression...

reaction catalyzed by a protein using that protein's amino acid sequence as an input, and to infer the structure of a metabolic network based on the predicted...

direct the production of proteins with the assistance of enzymes and messenger molecules. In turn, proteins make up body structures such as organs and tissues...

Users of The BioGRID can search for their protein, chemical or publication of interest and retrieve annotation, as well as curated data as reported, by...

SMIM14, which stabilizes the tertiary (and sometimes quaternary) structures of proteins. There are at least ten polyadenylation sequences in the 3’ UTR...

association with other annotation databases, such as ZFIN (The Zebrafish Information Network), the Havana Group and GenBank. Manual annotation is currently more...

methods use different properties of protein sequences and structures to find, characterize and annotate protein tandem repeats. Fournier D, Palidwor...

Separate modules extend Biopython's capabilities to sequence alignment, protein structure, population genetics, phylogenetics, sequence motifs, and machine...

(July 2011). "BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences". Nucleic Acids Research. 39...

(Chromosome 7, Open Reading Frame 50) is a gene in humans (Homo sapiens) that encodes a protein known as C7orf50 (uncharacterized protein C7orf50). This...

(PlaToLoCo) has been developed, for visualization and annotation of low complexity regions in proteins. PlaToLoCo integrates and collects the output of five...

and candidate gene prioritization based on functional annotations and protein interactions network. Developed and maintained by the Division of Biomedical...

Martin G (2001-12-01). "Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome". Computers & Chemistry...

organisms Identification of molecular structure from sequence alone. Since the very first sequences of the insulin protein were characterized by Fred Sanger...