Not to be confused with sequential analysis or sequence analysis of synthetic polymers.
In bioinformatics, sequence analysis is the process of subjecting a DNA, RNA or peptide sequence to any of a wide range of analytical methods to understand its features, function, structure, or evolution. It can be performed on the entire genome, transcriptome or proteome of an organism, and can also involve only selected segments or regions, like tandem repeats and transposable elements. Methodologies used include sequence alignment, searches against biological databases, and others.[1]
Since the development of methods of high-throughput production of gene and protein sequences, the rate of addition of new sequences to the databases increased very rapidly. Such a collection of sequences does not, by itself, increase the scientist's understanding of the biology of organisms. However, comparing these new sequences to those with known functions is a key way of understanding the biology of an organism from which the new sequence comes. Thus, sequence analysis can be used to assign function to coding and non-coding regions in a biological sequence usually by comparing sequences and studying similarities and differences. Nowadays, there are many tools and techniques that provide the sequence comparisons (sequence alignment) and analyze the alignment product to understand its biology.
Sequence analysis in molecular biology includes a very wide range of processes:
The comparison of sequences to find similarity, often to infer if they are related (homologous)
Identification of intrinsic features of the sequence such as active sites, post translational modification sites, gene-structures, reading frames, distributions of introns and exons and regulatory elements
Identification of sequence differences and variations such as point mutations and single nucleotide polymorphism (SNP) in order to get the genetic marker.
Revealing the evolution and genetic diversity of sequences and organisms
Identification of molecular structure from sequence alone.
^Durbin, Richard M.; Eddy, Sean R.; Krogh, Anders; Mitchison, Graeme (1998), Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids (1st ed.), Cambridge, New York: Cambridge University Press, ISBN 0-521-62971-3, OCLC 593254083
In bioinformatics, sequenceanalysis is the process of subjecting a DNA, RNA or peptide sequence to any of a wide range of analytical methods to understand...
A nucleic acid sequence is a succession of bases within the nucleotides forming alleles within a DNA (using GACT) or RNA (GACU) molecule. This succession...
A. Kabat, who pioneered biological sequenceanalysis in 1970 with his comprehensive volumes of antibody sequences released online with Tai Te Wu between...
sequenceanalysis (SA) is concerned with the analysis of sets of categorical sequences that typically describe longitudinal data. Analyzed sequences are...
properties of sequences. In particular, sequences are the basis for series, which are important in differential equations and analysis. Sequences are also...
analysis and 3) multilocus sequenceanalysis. In the data collection step, definitive identification of variation is obtained by nucleotide sequence determination...
Protein sequencing is the practical process of determining the amino acid sequence of all or part of a protein or peptide. This may serve to identify the...
In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence...
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molecular biology and bioinformatics, the consensus sequence (or canonical sequence) is the calculated sequence of most frequent residues, either nucleotide...
evolutionary relationships via phylogenetic analysis and can highlight homologous features between sequences. Alignments highlight mutation events such...
Song JH, et al. (July 2009). "Functional analysis of a novel DNA polymorphism of a tandem repeated sequence in the asparagine synthetase gene in acute...
infinite sequences, series, and analytic functions. These theories are usually studied in the context of real and complex numbers and functions. Analysis evolved...
In functional analysis and related areas of mathematics, a sequence space is a vector space whose elements are infinite sequences of real or complex numbers...
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an input sequence of characters and producing as output a sequence of symbols Object-oriented analysis and design – à la Booch Program analysis (computer...
averages the running times of operations in a sequence over that sequence.: 306 As a conclusion: "Amortized analysis is a useful tool that complements other...
Cluster analysis Social sequenceanalysis "USEARCH". drive5.com. "CD-HIT: a ultra-fast method for clustering protein and nucleotide sequences, with many...
integrates a range of currently available packages and tools for sequenceanalysis into a seamless whole. EMBOSS is an acronym for European Molecular...
real analysis, the monotone convergence theorem is any of a number of related theorems proving the convergence of monotonic sequences (sequences that...
Applied behavior analysis (ABA), also called behavioral engineering, is a psychological intervention that applies approaches based upon the principles...
list of sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment and multiple sequence alignment...