Most common variant of a genetic sequence across samples
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In molecular biology and bioinformatics, the consensus sequence (or canonical sequence) is the calculated sequence of most frequent residues, either nucleotide or amino acid, found at each position in a sequence alignment. It represents the results of multiple sequence alignments in which related sequences are compared to each other and similar sequence motifs are calculated. Such information is important when considering sequence-dependent enzymes such as RNA polymerase.[1]
^Pierce, Benjamin A. 2002. Genetics : A Conceptual Approach. 1st ed. New York: W.H. Freeman and Co.
and 25 Related for: Consensus sequence information
molecular biology and bioinformatics, the consensussequence (or canonical sequence) is the calculated sequence of most frequent residues, either nucleotide...
The Kozak consensussequence (Kozak consensus or Kozak sequence) is a nucleic acid motif that functions as the protein translation initiation site in...
sequences). A sequence logo is created from a collection of aligned sequences and depicts the consensussequence and diversity of the sequences. Sequence logos...
database. Consensussequence, the order of nucleotide or amino acid residues most frequently found within a DNA, RNA or protein sequence. Consensus theorem...
initiation. In prokaryotes, DUEs are found in the form of tandem consensussequences flanking the 5' end of DnaA binding domain. The act of unwinding...
called the Pribnow box which has a shorter consensussequence. The TATA box is considered a non-coding DNA sequence (also known as a cis-regulatory element)...
Such techniques belong to the discipline of bioinformatics. See also consensussequence. Consider the N-glycosylation site motif mentioned above: Asn, followed...
DNA for transcription to occur in bacteria. It is an idealized or consensussequence—that is, it shows the most frequently occurring base at each position...
Shine-Dalgarno sequence, the Kozak consensussequence and the RNA polymerase III terminator. In bioinformatics, a sequence entropy, also known as sequence complexity...
scores is the automatic determination of accurate, quality-based consensussequences. Phred quality scores Q {\displaystyle Q} are logarithmically related...
box or CAT box) is a distinct pattern of nucleotides with GGCCAATCT consensussequence that occur upstream by 60–100 bases to the initial transcription site...
box (consensussequence TATAAA), which contains the stop codon TAA. Bacterial promoter elements at ~10 bases exhibits a TATA box with a consensus of TATAAT...
Interferon regulatory factor 8 (IRF8) also known as interferon consensussequence-binding protein (ICSBP), is a protein that in humans is encoded by the...
conditions. The inositol-sensitive upstream activation sequence (UASINO) has a consensussequence 5'-CATGTGAAAT-3' and is present in the promoter regions...
is sequenced several times in the same direction. If a consensus base is covered by both high-quality sequence and (discrepant) low-quality sequence, Phrap's...
initiate transcription.: 7.1 The recognition typically occurs as a consensussequence like the TATA box. A gene can have more than one promoter, resulting...
mediator. Chelsky et al. proposed the consensussequence K-K/R-X-K/R for monopartite NLSs. A Chelsky sequence may, therefore, be part of the downstream...
large sets of consensussequences are multiplexed in each reaction, and where one set competes for binding, the individual consensussequences from this set...
proteins to specific intracellular or extracellular locations. While no consensussequence has been identified for signal peptides, many nonetheless possess...
branchpoint is always an A; the consensus around this sequence varies somewhat. In humans the branch site consensussequence is yUnAy. The branch site is...
consensussequence of E(E/L)PFPS. Additionally, for three other keratan sulfated proteoglycans, lumican, keratocan, and mimecan (OGN), the consensus sequence...
repeat identification involves building a consensus of each family of sequences. A consensussequence is a sequence that is created based on the repeats that...
to a consensussequence present within the coding sequences of at least some Bvg-repressed genes. Binding of this protein to the consensussequence represents...
functioning of the origin. Element A is highly conserved, consisting of the consensussequence: 5'- T/A T T T A Y R T T T T/A -3' (where Y is either pyrimidine and...
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