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Multilocus sequence typing information


Multilocus sequence typing (MLST) is a technique in molecular biology for the typing of multiple loci, using DNA sequences of internal fragments of multiple housekeeping genes to characterize isolates of microbial species.

The first MLST scheme to be developed was for Neisseria meningitidis,[1] the causative agent of meningococcal meningitis and septicaemia. Since its introduction for the research of evolutionary history, MLST has been used not only for human pathogens but also for plant pathogens.[2]

  1. ^ Maiden, MC.; Bygraves, JA.; Feil, E.; Morelli, G.; Russell, JE.; Urwin, R.; Zhang, Q.; Zhou, J.; et al. (Mar 1998). "Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms". Proc Natl Acad Sci U S A. 95 (6): 3140–5. Bibcode:1998PNAS...95.3140M. doi:10.1073/pnas.95.6.3140. PMC 19708. PMID 9501229.
  2. ^ Sarris, PF; Trantas, EA; Mpalantinaki, E; Ververidis, F; Goumas, DE (2012). "Pseudomonas viridiflava, a multi host plant pathogen with significant genetic variation at the molecular level". PLOS ONE. 7 (4): e36090. Bibcode:2012PLoSO...736090S. doi:10.1371/journal.pone.0036090. PMC 3338640. PMID 22558343.

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Multilocus sequence typing

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Multilocus sequence typing (MLST) is a technique in molecular biology for the typing of multiple loci, using DNA sequences of internal fragments of multiple...

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Cronobacter sakazakii

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clinical cases of infection in either adults or infants. However multilocus sequence typing has shown that the majority of neonatal meningitis cases in the...

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Burkholderia mallei

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causing it. It is closely related to B. pseudomallei, and by multilocus sequence typing it is a subspecies of B. pseudomallei. B. mallei evolved from...

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Streptococcus dysgalactiae

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performed by multilocus sequence typing. MALDI TOF MS does currently not possess taxonomic resolution beyond the species level. Several different typing systems...

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Lacticaseibacillus paracasei

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diversity for the different L. paracasei genomes was assessed using multilocus sequence typing (MLST) and amplified fragment length polymorphism (AFLP). MLST...

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Neisseria meningitidis

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available for N. meningitidis core genome Multilocus sequence typing (cgMLST). Available at: Neisseria typing Genetic transformation is the process by...

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Diagnostic microbiology

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microbial diagnostics. Multilocus sequence typing (MLST) is the sequencing of numerous loci to diagnose an organism by comparing DNA sequences to a database of...

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Salmonella

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biology techniques such as pulsed-field gel electrophoresis, multilocus sequence typing, and, increasingly, whole genome sequencing. Historically, salmonellae...

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Staphylococcus aureus

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"band-based" or "sequence-based" are employed. Keeping these two methods in mind, other methods such as multilocus sequence typing (MLST), pulsed-field...

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Haemophilus influenzae

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however, all H. influenzae isolates can now be classified by multilocus sequence typing and other molecular methods. Most NTHi strains are considered...

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Acinetobacter

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discriminative ability. However, most recent methods include multilocus sequence typing and multilocus PCR and electrospray ionization mass spectrometry, which...

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Leprosy

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and the cynomolgus macaque), armadillos, and red squirrels. Multilocus sequence typing of the armadillo M. leprae strains suggests that they were of...

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Pantoea agglomerans

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identification of Pantoea agglomerans non-culture based methods such as Multilocus sequence typing (MLST) or Whole-Cell MALDI-TOF MS are recommended. Includes P...

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Cyclospora cayetanensis

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Recent attempts at a better genotyping characterisation include multilocus sequence typing based on microsatellite markers and single nucleotide polymorphisms...

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MLSA

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for mycolactone biosynthesis Multilocus sequence analysis, a molecular biology technique involving Multilocus sequence typing Museum and Library Services...

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Leptospira

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Leptospira lead to the development of multilocus VNTR (Variable Number of Tandem Repeats) typing and multilocus sequence typing (MLST) for species level identification...

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Streptococcus uberis

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"First insights into the evolution of Streptococcus uberis: a multilocus sequence typing scheme that enables investigation of its population biology"....

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Betaproteobacteria

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53-protein ribosomal protein concatamer analyses using the rMLST Multilocus sequence typing system) was published in 2017, that removed the order Hydrogenophilales...

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Amphibian

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precise dating, but the most recent molecular study, based on multilocus sequence typing, suggests a Late Carboniferous/Early Permian origin for extant...

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Paenibacillus larvae

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larvae , the causative agent of American foulbrood, using a new multilocus sequence typing scheme". Environmental Microbiology. 17 (4): 1414–1424. Bibcode:2015EnvMi...

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Hydrogenophilaceae

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protein sequences concatenated using the rMLST platform for multilocus sequence typing. The class comprises one order, the Hydrogenophilales (type order)...

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Cronobacter malonaticus

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Manning, Georgina; Dowson, Christopher; Forsythe, Stephen (2009). "Multilocus sequence typing of Cronobacter sakazakii and Cronobacter malonaticus reveals stable...

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Staphylococcus pseudintermedius

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"Staphylococcus pseudintermedius: Inference of Population Structure from Multilocus Sequence Typing Data". Frontiers in Microbiology. 7: 1599. doi:10.3389/fmicb.2016...

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Melioidosis

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Drukkerij. Godoy D; Randle G; Simpson AJ; Aanensen DM (May 2003). "Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis...

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Plains spadefoot toad

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derived, this could explain why their fossil record is poor. Multilocus sequence typing has proposed a Late Carboniferous/Early Permian origin around...

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Verticillium nonalfalfae

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(2014). "Comparative pathogenicity, biocontrol efficacy, and multilocus sequence typing of Verticillium nonalfalfae from the invasive Ailanthus altissima...

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Global microbial identifier

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polymerase chain reaction, pulsed-field gel electrophoresis or multilocus sequence typing. A complication of this broad variety of techniques is the difficulty...

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Microbiology of Lyme disease

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burgdorferi sensu stricto revealed by three-way genome comparisons and multilocus sequence typing" (PDF). Proc Natl Acad Sci USA. 101 (39): 14150–5. Bibcode:2004PNAS...

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Golovinomyces orontii

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cucurbit powdery mildew fungus Golovinomyces orontii inferred by multilocus sequence typing". Plant Pathology. 65 (6): 959–967. doi:10.1111/ppa.12480. Rongai...

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Niyaz Ahmed

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interaction over time. Ahmed's group has developed a widely used multilocus sequence typing scheme for species level identification of pathogenic Leptospira...

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