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Protein sequencing information


Using a Beckman-Spinco Protein-Peptide Sequencer, 1970

Protein sequencing is the practical process of determining the amino acid sequence of all or part of a protein or peptide. This may serve to identify the protein or characterize its post-translational modifications. Typically, partial sequencing of a protein provides sufficient information (one or more sequence tags) to identify it with reference to databases of protein sequences derived from the conceptual translation of genes.

The two major direct methods of protein sequencing are mass spectrometry and Edman degradation using a protein sequenator (sequencer). Mass spectrometry methods are now the most widely used for protein sequencing and identification but Edman degradation remains a valuable tool for characterizing a protein's N-terminus.

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Protein sequencing

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Protein sequencing is the practical process of determining the amino acid sequence of all or part of a protein or peptide. This may serve to identify the...

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Sequencing

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including DNA sequencing, DNA synthesis, and a range of physical and computational tools used in protein expression and in determining protein structures...

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ChIP sequencing

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ChIP-sequencing, also known as ChIP-seq, is a method used to analyze protein interactions with DNA. ChIP-seq combines chromatin immunoprecipitation (ChIP)...

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Nanopore sequencing

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the idea for nanopore sequencing was David Deamer. In 1989 he sketched out a plan to drive a single-strand of DNA through a protein nanopore embedded into...

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Sanger sequencing

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99.99%. Sanger sequencing is still actively being used in efforts for public health initiatives such as sequencing the spike protein from SARS-CoV-2...

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DNA sequencing

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DNA sequencing is also the most efficient way to indirectly sequence RNA or proteins (via their open reading frames). In fact, DNA sequencing has become...

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Exome sequencing

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Exome sequencing, also known as whole exome sequencing (WES), is a genomic technique for sequencing all of the protein-coding regions of genes in a genome...

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Shotgun proteomics

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chromatography combined with mass spectrometry. The name is derived from shotgun sequencing of DNA which is itself named after the rapidly expanding, quasi-random...

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Genomics

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data produced by genomic projects (such as genome sequencing projects) to describe gene (and protein) functions and interactions. Functional genomics focuses...

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Bioinformatics

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structure analysis: Protein Data Bank (PDB) Used in finding Protein Families and Motif Finding: InterPro, Pfam Used for Next Generation Sequencing: Sequence Read...

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Whole genome sequencing

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Whole genome sequencing (WGS), also known as full genome sequencing, complete genome sequencing, or entire genome sequencing, is the process of determining...

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Human genome

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protein and RNA products (in particular, annotation of the complete CHM13v2.0 sequence is still ongoing). In 2003, scientists reported the sequencing...

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Protein primary structure

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Protein primary structure is the linear sequence of amino acids in a peptide or protein. By convention, the primary structure of a protein is reported...

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Dansyl chloride

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Dansyl chloride is widely used to modify amino acids; specifically, protein sequencing and amino acid analysis. Dansyl chloride may also be denoted DNSC...

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Antibody

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for peptide/protein identification is liquid chromatography coupled with tandem mass spectrometry (LC-MS/MS). High volume antibody sequencing methods require...

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Protein methods

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ChIP-on-chip Chip-sequencing DamID Microscale thermophoresis Toeprinting assay TCP-seq Molecular dynamics Protein structure prediction Protein sequence alignment...

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Nanopore

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single-molecule analysis of DNA-protein interactions, as well as peptide sequencing. When it comes to peptide sequencing bacterial nanopores like hemolysin...

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Protein

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computing power also supported the sequencing of complex proteins. In 1999, Roger Kornberg succeeded in sequencing the highly complex structure of RNA...

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Illumina dye sequencing

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whole-genome and region sequencing, transcriptome analysis, metagenomics, small RNA discovery, methylation profiling, and genome-wide protein-nucleic acid interaction...

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De novo peptide sequencing

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In mass spectrometry, de novo peptide sequencing is the method in which a peptide amino acid sequence is determined from tandem mass spectrometry. Knowing...

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Araneus ventricosus

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Jiang, Liping; Liang, Songping (January 2013). "A combined de novo protein sequencing and cDNA library approach to the venomic analysis of Chinese spider...

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Perissodactyla

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However, a close relationship can be worked out to perissodactyls by protein sequencing and comparison with fossil collagen from remnants of phylogenetically...

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