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Protein tertiary structure information


Protein primary structureProtein secondary structureProtein tertiary structureProtein quaternary structure
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This diagram (which is interactive) of protein structure uses PCNA as an example. (PDB: 1AXC​)
Tertiary Structure of a Protein
The tertiary structure of a protein consists of the way a polypeptide is formed of a complex molecular shape. This is caused by R-group interactions such as ionic and hydrogen bonds, disulphide bridges, and hydrophobic & hydrophilic interactions.

Protein tertiary structure is the three-dimensional shape of a protein. The tertiary structure will have a single polypeptide chain "backbone" with one or more protein secondary structures, the protein domains. Amino acid side chains and the backbone may interact and bond in a number of ways. The interactions and bonds of side chains within a particular protein determine its tertiary structure. The protein tertiary structure is defined by its atomic coordinates. These coordinates may refer either to a protein domain or to the entire tertiary structure.[1][2] A number of these structures may bind to each other, forming a quaternary structure.[3]

  1. ^ IUPAC, Compendium of Chemical Terminology, 2nd ed. (the "Gold Book") (1997). Online corrected version: (2006–) "tertiary structure". doi:10.1351/goldbook.T06282
  2. ^ Branden C. and Tooze J. "Introduction to Protein Structure" Garland Publishing, New York. 1990 and 1991.
  3. ^ Kyte, J. "Structure in Protein Chemistry." Garland Publishing, New York. 1995. ISBN 0-8153-1701-8

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Protein tertiary structure

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Protein tertiary structure is the three-dimensional shape of a protein. The tertiary structure will have a single polypeptide chain "backbone" with one...

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Protein quaternary structure

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Protein quaternary structure is the fourth (and highest) classification level of protein structure. Protein quaternary structure refers to the structure...

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Protein structure

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Protein structure is the three-dimensional arrangement of atoms in an amino acid-chain molecule. Proteins are polymers – specifically polypeptides – formed...

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Protein secondary structure

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Secondary structure elements typically spontaneously form as an intermediate before the protein folds into its three dimensional tertiary structure. Secondary...

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secondary and tertiary structure from primary structure. Structure prediction is different from the inverse problem of protein design. Protein structure prediction...

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List of protein structure prediction software

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of protein structure prediction software summarizes notable used software tools in protein structure prediction, including homology modeling, protein threading...

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Protein fold class

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molecular biology, protein fold classes are broad categories of protein tertiary structure topology. They describe groups of proteins that share similar...

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De novo protein structure prediction

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computational biology, de novo protein structure prediction refers to an algorithmic process by which protein tertiary structure is predicted from its amino...

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Protein folding

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core of the protein. Secondary structure hierarchically gives way to tertiary structure formation. Once the protein's tertiary structure is formed and...

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Biomolecular structure

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The tertiary structure of a protein or any other macromolecule is its three-dimensional structure, as defined by the atomic coordinates. Proteins and...

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Protein primary structure

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Protein primary structure is the linear sequence of amino acids in a peptide or protein. By convention, the primary structure of a protein is reported...

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Globular protein

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dynamic light scattering techniques. The spherical structure is induced by the protein's tertiary structure. The molecule's apolar (hydrophobic) amino acids...

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Protein domain

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3D structure of the polypeptide chain is referred to as the protein's tertiary structure. Domains are the fundamental units of tertiary structure, each...

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Protein

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responding to stimuli, providing structure to cells and organisms, and transporting molecules from one location to another. Proteins differ from one another primarily...

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Protein biosynthesis

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secondary structure then folds to produce the tertiary structure of the protein. The tertiary structure is the proteins overall 3D structure which is made...

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Prion

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Effective prion decontamination relies upon protein hydrolysis or reduction or destruction of protein tertiary structure. Examples include sodium hypochlorite...

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Protein contact map

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A protein contact map represents the distance between all possible amino acid residue pairs of a three-dimensional protein structure using a binary two-dimensional...

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Structural alignment

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more polymer structures based on their shape and three-dimensional conformation. This process is usually applied to protein tertiary structures but can also...

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Beta sheet

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(β-sheet, also β-pleated sheet) is a common motif of the regular protein secondary structure. Beta sheets consist of beta strands (β-strands) connected laterally...

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Nucleic acid tertiary structure

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Nucleic acid tertiary structure is the three-dimensional shape of a nucleic acid polymer. RNA and DNA molecules are capable of diverse functions ranging...

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Nucleic acid quaternary structure

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as proteins, nucleic acids have four levels of structural arrangement: primary, secondary, tertiary, and quaternary structure. Primary structure is the...

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Protein quinary structure

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Quinary structure is thus the fifth level of protein complexity, additional to protein primary, secondary, tertiary and quaternary structures. As opposed...

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Protein superfamily

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elements and tertiary structural motifs are highly conserved. Some protein dynamics and conformational changes of the protein structure may also be conserved...

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Cystine

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cystine supplements. Lanthionine, similar with mono-sulfide link Protein tertiary structure Sullivan reaction Cystinosis Nelson, D. L.; Cox, M. M. (2000)...

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CASP

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descent to a protein sequence of known structure (called a template), comparative protein modeling may be used to predict the tertiary structure. Templates...

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Structure

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sheet. The tertiary structure is a back and forth bending of the polypeptide chain, and the quaternary structure is the way that tertiary units come together...

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EMBOSS

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for sequence alignment, rapid database searching with sequence patterns, protein motif identification (including domain analysis), and much more. The AJAX...

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Molten globule

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tertiary structure of completely folded proteins (hence the "molten"). Protein folding is navigated by a dynamic interplay of secondary and tertiary interactions...

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