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List of RNA structure prediction software information


This list of RNA structure prediction software is a compilation of software tools and web portals used for RNA structure prediction.

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List of RNA structure prediction software

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This list of RNA structure prediction software is a compilation of software tools and web portals used for RNA structure prediction. The single sequence...

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List of bioinformatics software

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List of protein-ligand docking software List of RNA structure prediction software List of software for protein model error verification List of protein...

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List of gene prediction software

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a list of software tools and web portals used for gene prediction. Gene prediction List of RNA structure prediction software Comparison of software for...

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Biomolecular structure

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secondary structure of RNA molecules. Approaches include both experimental and computational methods (see also the List of RNA structure prediction software)....

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Nucleic acid secondary structure

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secondary structure of RNA molecules, with approaches including both experimental and computational methods (see also the List of RNA structure prediction software)...

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Secondary structure prediction

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Protein structure prediction Nucleic acid structure prediction List of protein secondary structure prediction programs List of RNA structure prediction software...

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Sequence analysis

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phylogenetic tree visualization software List of protein structure prediction software List of RNA structure prediction software Durbin, Richard M.; Eddy, Sean...

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Nucleic acid methods

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Toeprinting assay Several bioinformatics methods, as seen in list of RNA structure prediction software CSH Protocols Current Protocols Tang, Wei; Hu, Shichao;...

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Nucleic acid structure prediction

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refinement. RNA RNA structure Non-coding RNA List of RNA structure prediction software Comparison of nucleic acid simulation software Comparison of software for...

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ViennaRNA Package

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The ViennaRNA Package is a set of standalone programs and libraries used for prediction and analysis of RNA secondary structures. The source code for the...

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Comparison of nucleic acid simulation software

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software List of gene prediction software List of RNA structure prediction software Comparison of software for molecular mechanics modeling List of software...

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Gene prediction

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genes as well as RNA genes, but may also include prediction of other functional elements such as regulatory regions. Gene finding is one of the first and...

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NUPACK

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Institute of Technology (Caltech). RNA RNA structure List of RNA structure prediction software Comparison of nucleic acid simulation software Official...

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List of protein subcellular localization prediction tools

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This list of protein subcellular localisation prediction tools includes software, databases, and web services that are used for protein subcellular localization...

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Structural alignment

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used for large RNA molecules. In contrast to simple structural superposition, where at least some equivalent residues of the two structures are known, structural...

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Protein secondary structure

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secondary structure Translation Structural motif Protein circular dichroism data bank WHAT IF software List of protein secondary structure prediction programs...

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Structural bioinformatics

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bioinformatics is the branch of bioinformatics that is related to the analysis and prediction of the three-dimensional structure of biological macromolecules...

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Escherichia coli sRNA

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elegans sRNA Bacteroides thetaiotaomicron sRNA List of RNA structure prediction software Hershberg R, Altuvia S, Margalit H (April 2003). "A survey of small...

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MicroRNA sequencing

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and PicTar are software designed for this purpose. A list of prediction software is given here. The general steps are: Determine miRNA:mRNA binding pairs...

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DNA annotation

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such as tRNA, rRNA, snoRNA, and microRNA, as well as noncoding mRNA-like transcripts. Ab initio prediction of RNA genes in a single genome often yields...

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Bioinformatics

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assembly, drug design, drug discovery, protein structure alignment, protein structure prediction, prediction of gene expression and protein–protein interactions...

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PSIPRED

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function prediction De novo protein structure prediction Molecular design software List of protein structure prediction software Comparison of software for...

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GeneMark

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generic name for a family of ab initio gene prediction algorithms and software programs developed at the Georgia Institute of Technology in Atlanta. Developed...

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Structure validation

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rotamer library. Though, mRNA structures are generally short-lived and single-stranded, there are an abundance of non-coding RNAs with different secondary...

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Sequence alignment

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alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural...

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SLC46A3

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Y, Wang X (January 2020). "miRDB: an online database for prediction of functional microRNA targets". Nucleic Acids Research. 48 (D1): D127–D131. doi:10...

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