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MicroRNA sequencing information


MicroRNA sequencing (miRNA-seq), a type of RNA-Seq, is the use of next-generation sequencing or massively parallel high-throughput DNA sequencing to sequence microRNAs, also called miRNAs. miRNA-seq differs from other forms of RNA-seq in that input material is often enriched for small RNAs. miRNA-seq allows researchers to examine tissue-specific expression patterns, disease associations, and isoforms of miRNAs, and to discover previously uncharacterized miRNAs. Evidence that dysregulated miRNAs play a role in diseases such as cancer[1] has positioned miRNA-seq to potentially become an important tool in the future for diagnostics and prognostics as costs continue to decrease.[2] Like other miRNA profiling technologies, miRNA-Seq has both advantages (sequence-independence, coverage) and disadvantages (high cost, infrastructure requirements, run length, and potential artifacts).[3]

  1. ^ Farazi, Thalia A; Spitzer, Jessica I; Morozov, Pavel; Tuschl, Thomas (2011). "miRNAs in human cancer". The Journal of Pathology. 223 (2): 102–115. doi:10.1002/path.2806. ISSN 0022-3417. PMC 3069496. PMID 21125669.
  2. ^ Sandhu, S.; Garzon, R. (2011). "Potential Applications of MicroRNAs in Cancer Diagnosis, Prognosis, and Treatment". Semin Oncol. 38 (6): 781–787. doi:10.1053/j.seminoncol.2011.08.007. PMID 22082764.
  3. ^ Cite error: The named reference Baker2010 was invoked but never defined (see the help page).

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MicroRNA sequencing

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MicroRNA sequencing (miRNA-seq), a type of RNA-Seq, is the use of next-generation sequencing or massively parallel high-throughput DNA sequencing to sequence...

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MicroRNA

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MicroRNA (miRNA) are small, single-stranded, non-coding RNA molecules containing 21 to 23 nucleotides. Found in plants, animals and some viruses, miRNAs...

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Sequencing

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next-generation sequencing applied to whole transcriptomes see: RNA-Seq and MicroRNA Sequencing. Methods for performing protein sequencing include: Edman...

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Small RNA

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: 366  Small RNA have been detected or sequenced using a range of techniques, including directly by MicroRNA sequencing on several sequencing platforms,...

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DNA sequencing

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ionic current methods and the sequencing of several DNA oligomers and micro-RNA has already been achieved. Sequencing by hybridization is a non-enzymatic...

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Degradome sequencing

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mRNA targets with the associated alignments for the small RNA-mRNA pairs. The applications of degradome sequencing include identifying microRNA (miRNA)...

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MicroRNA and microRNA target database

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This microRNA database and microRNA targets databases is a compilation of databases and web portals and servers used for microRNAs and their targets....

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MicroRNA biosensors

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MicroRNA (miRNA) biosensors are analytical devices that involve interactions between the target miRNA strands and recognition element on a detection platform...

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RNA

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transfer RNA (tRNA), microRNA (miRNA), small interfering RNA (siRNA), small nucleolar RNA (snoRNAs), Piwi-interacting RNA (piRNA), tRNA-derived small RNA (tsRNA)...

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RNA editing

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modifications of RNA molecules and determine the transcriptome-wide landscape of RNA modifications by means of next generation RNA sequencing, recently many...

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Spatial transcriptomics

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of RNA binding, DNA-barcoded micro beads to a rubber coated glass coverslip. The microbeads are mapped to their spatial location via SOLiD sequencing. Tissue...

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Extracellular RNA

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considered as a possible mechanism for RNA secretion from the cell, but more recently research studying microRNA secretion in human embryonic kidney cells...

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Genome

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repetitive sequences. With advancements in technology that could handle sequencing of the many repetitive sequences found in human DNA that were not fully...

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Ribosomal RNA

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S2CID 23728518. Ju Son D (2013). "The atypical mechanosensitive microRNA-712 derived from pre-ribosomal RNA induces endothelial inflammation and atherosclerosis"...

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Circular RNA

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microRNAs". Trends in Biotechnology. 27 (1): 27–36. doi:10.1016/j.tibtech.2008.09.006. PMID 19012978. Ebert MS, Sharp PA (November 2010). "MicroRNA sponges:...

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IsomiR

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(2010). "Complexity of the microRNA repertoire revealed by next-generation sequencing". RNA. 16 (11): 2170–2180. doi:10.1261/rna.2225110. PMC 2957056. PMID 20876832...

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List of RNA structure prediction software

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PMID 19765283. Thadani R, Tammi MT (December 2006). "MicroTar: predicting microRNA targets from RNA duplexes". BMC Bioinformatics. 7. 7 (Suppl 5): S20....

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