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FESD
Content
Description
Functional Element SNPs Database in humans.
Organisms
Homo sapiens
Contact
Authors
Hyo Jin Kang
Primary citation
Kang & al. (2005)[1]
Access
Website
http://combio.kribb.re.kr/ksnp/resd/
The Functional Element SNPs Database (FESD) is a biological database of single nucleotide polymorphisms in molecular biology.[1] The database is a tool designed to organize functional elements into categories in human gene regions and to output their sequences needed for genotyping[2] experiments as well as provide a set of SNPs that lie within each region. The database defines functional elements into ten types: promoter regions, CpG islands, 5' untranslated regions (5'-UTRs), translation start sites, splice sites, coding exons, introns, translation stop sites, polyadenylation signals, and 3' UTRs.[3] People may reference this database for haplotype information or obtain a flanking sequence for genotyping.[4] This may help in finding mutations that contribute to common and polygenic diseases. Researchers can manually choose a group of SNPs of special interest for certain functional elements along with their corresponding sequences.[5] The database combines information from sources such as HapMap, UCSC GoldenPath, dbSNP, OMIM, and TRANSFAC. Users can obtain information about tag SNPs and simulate LD blocks for each gene. FESD is still a developing database and is not widely known so was unable to find projects that used the database. Research was found using similar databases or databases that are combined in FESD's information pool.[6]
^ abKang, H. J.; Choi, KO; Kim, BD; Kim, S; Kim, YJ (2004). "FESD: A Functional Element SNPs Database in human". Nucleic Acids Research. 33 (Database issue): D518–22. doi:10.1093/nar/gki082. PMC 540036. PMID 15608252.
^Kadarmideen, Haja N.; et al. (2010). "Functsnp: An R Package To Link Snps To Functionalknowledge And Dbautomaker: A Suite Of Perlscripts To Build SNP Databases". BMC Bioinformatics. 11: 311–319. doi:10.1186/1471-2105-11-311. PMC 2901372. PMID 20534127.
^MAH, James T. L. (2007). "A Gentle Introduction To Snp Analysis:: Resources And Tools". Journal of Bioinformatics and Computational Biology. 5 (5): 1123–1138. doi:10.1142/s0219720007003090. PMID 17933014.
^Hsueh-Wei, Chang; et al. (2009). "Dynamic Programming For Single Nucleotide Polymorphism ID Identification In Systematic Association Studies". Kaohsiung Journal of Medical Sciences. 25 (4): 165–176. doi:10.1016/S1607-551X(09)70057-9. PMID 19502133. S2CID 206172839.
^Yang, Cheng-Hong; Chuang, Li-Yeh; Cheng, Yu-Huei; Wen, Cheng-Hao; Chang, Hsueh-Wei (2009). "Dynamic Programming for Single Nucleotide Polymorphism ID Identification in Systematic Association Studies". The Kaohsiung Journal of Medical Sciences. 25 (4): 165–76. doi:10.1016/S1607-551X(09)70057-9. PMID 19502133.
^Kang, H.J. ( 1,2,3 ), et al. "FESD: A Functional Element Snps Database In Human." Nucleic Acids Research 33. Database ISS. (2005): D518-D522. Scopus. Web. 4 Nov. 2013
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only SNP, or single-nucleotide polymorphism, for the C11orf73 sequence results in an amino acid change within the protein. The lack of other SNPs are most...
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Walker E, Der S, Paranjape JM, Silverman RH, Williams BR (June 2001). "Functional classification of interferon-stimulated genes identified using microarrays"...
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