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Tandem Repeats Database information


TRDB-
Content
DescriptionTandem repeats
Contact
Research centerBoston University
LaboratoryLab for Biocomputing and Informatics
AuthorsYevgeniy Gelfand
Primary citationGelfand et al. (2007)[1]
Release date2006
Access
Websitehttps://tandem.bu.edu/cgi-bin/trdb/trdb.exe

The Tandem Repeats Database (TRDB) is a database of tandem repeats in genomic DNA.[1]

  1. ^ a b Gelfand, Yevgeniy; Rodriguez Alfredo; Benson Gary (January 2007). "TRDB--the Tandem Repeats Database". Nucleic Acids Res. 35 (Database issue): D80-7. doi:10.1093/nar/gkl1013. ISSN 0305-1048. PMC 1781109. PMID 17175540.

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Tandem Repeats Database

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The Tandem Repeats Database (TRDB) is a database of tandem repeats in genomic DNA. Tandem repeats Gelfand, Yevgeniy; Rodriguez Alfredo; Benson Gary (January...

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Tandem repeat

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Microsatellite Minisatellite ProRepeat Satellite DNA Tandem Repeats Database Tandem repeat locus Variable number tandem repeats Tandem+Repeat at the U.S. National...

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Variable number tandem repeat

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animated example Databases : The Microorganisms Tandem Repeats Database The MLVAbank Short Tandem Repeats Database Tandem Repeats Database (TRDB) Search...

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Microsatellite

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often referred to as short tandem repeats (STRs) by forensic geneticists and in genetic genealogy, or as simple sequence repeats (SSRs) by plant geneticists...

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Protein tandem repeats

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An array of protein tandem repeats is defined as several (at least two) adjacent copies having the same or similar sequence motifs. These periodic sequences...

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Inverted repeat

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inverted repeat sequence. When the intervening length is zero, the composite sequence is a palindromic sequence. Both inverted repeats and direct repeats constitute...

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STR analysis

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Short tandem repeat (STR) analysis is a common molecular biology method used to compare allele repeats at specific loci in DNA between two or more samples...

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ProRepeat

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ProRepeat is a database of protein repeats. Tandem repeat Luo, Hong; Lin Ke; David Audrey; Nijveen Harm; Leunissen Jack A M (Jan 2012). "ProRepeat: an...

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Genome

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repeats, while minisatellite repeats are 30–35 bp. Tandem repeats make up about 4% of the human genome and 9% of the fruit fly genome. Tandem repeats...

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United Kingdom National DNA Database

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matches of unsolved crimes between 2001 and 2020. Only patterns of short tandem repeats are stored in the NDNAD – not a person's full genomic sequence. Since...

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Strbase

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STRBase in computational biology is a database of Short Tandem Repeats Genetic marker List of biological databases Microsatellite instability Mobile element...

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Combined DNA Index System

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state lines. The bulk of identifications using CODIS rely on short tandem repeats (STRs) that are scattered throughout the human genome and on statistics...

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STR multiplex system

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An STR multiplex system is used to identify specific short tandem repeats (STRs). STR polymorphisms are genetic markers that may be used to identify a...

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Transposable element

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repetitive elements. This method works best for tandem repeats, but can be used for dispersed repeats as well. However, it is a slow process, making it...

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DNA database

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profiles of its population. Each DNA profile based on PCR uses STR (Short Tandem Repeats) analysis. They are generally used for forensic purposes, including...

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Copy number variation

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repeats include mainly dinucleotide repeats (two repeating nucleotides e.g. A-C-A-C-A-C...) and trinucleotide repeats. Long repeats include repeats of...

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Second Generation Multiplex Plus

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recorded. The genetic markers (or loci) used by SGM Plus are all short tandem repeats (STRs). The markers used are: VWA, D8S1179, D21S11, D18S51, TH01, FGA...

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Beta helix

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A beta helix is a tandem protein repeat structure formed by the association of parallel beta sheet in a helical pattern with either two or three faces...

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Restriction fragment length polymorphism

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includes a variable number tandem repeat (VNTR) segment (boxes in schematic diagram). In allele c, there are five repeats in the VNTR, and the probe detects...

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IC codes

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2014, a global forensic database based on the codes was established. It contains the DNA microsatellite (short tandem repeat) profiles of 7,121 individuals...

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DbSNP

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insertion polymorphisms (indels/DIPs), (3) microsatellite markers or short tandem repeats (STRs), (4) multinucleotide polymorphisms (MNPs), (5) heterozygous sequences...

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Multiple loci VNTR analysis

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takes advantage of the polymorphism of tandemly repeated DNA sequences. A "VNTR" is a "variable-number tandem repeat". This method is well known in forensic...

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Alpha solenoid

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helical tandem repeats, including HEAT repeats, Armadillo repeats, tetratricopeptide (TPR) repeats, leucine-rich repeats, and ankyrin repeats. Alpha solenoids...

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Structural motif

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length and unspecified structure. Structural motifs may also appear as tandem repeats. Beta hairpin Extremely common. Two antiparallel beta strands connected...

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