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OBO Foundry information


OBO Foundry
FocusImprovent of biomedical ontologies
Members
27
Key people
Suzanna Lewis, Barry Smith, Michael Ashburner
Websiteobofoundry.org

The Open Biological and Biomedical Ontologies (OBO) Foundry is a group of people dedicated to build and maintain ontologies related to the life sciences.[1] The OBO Foundry establishes a set of principles for ontology development for creating a suite of interoperable reference ontologies in the biomedical domain. Currently, there are more than a hundred ontologies that follow the OBO Foundry principles.

The OBO Foundry effort makes it easier to integrate biomedical results and carry out analysis in bioinformatics. It does so by offering a structured reference for terms of different research fields and their interconnections (ex: a phenotype in a mouse model and its related phenotype in zebrafish).[2]

  1. ^ Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, et al. (November 2007). "The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration". Nature Biotechnology. 25 (11): 1251–5. doi:10.1038/nbt1346. PMC 2814061. PMID 17989687.
  2. ^ Mungall, Christopher J; Gkoutos, Georgios V; Smith, Cynthia L; Haendel, Melissa A; Lewis, Suzanna E; Ashburner, Michael (2010). "Integrating phenotype ontologies across multiple species". Genome Biology. 11 (1): R2. doi:10.1186/gb-2010-11-1-r2. ISSN 1465-6906. PMC 2847714. PMID 20064205.

and 26 Related for: OBO Foundry information

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OBO Foundry

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Biomedical Ontologies (OBO) Foundry is a group of people dedicated to build and maintain ontologies related to the life sciences. The OBO Foundry establishes a...

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List of OBO Foundry ontologies

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This is a list of ontologies that are part of the OBO Foundry as of January 2020.[update] Hogan WR, Wagner MM, Brochhausen M, Levander J, Brown ST, Millett...

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Naming convention

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terminology-regulatory bodies or by policy providers such as ISO or the OBO Foundry. The names of universities can commemorate founders, patrons or relevant...

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Gene Ontology

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Biomedical Ontologies, being one of the Initial Candidate Members of the OBO Foundry. Whereas gene nomenclature focuses on gene and gene products, the Gene...

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Web Ontology Language

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2009. Retrieved 27 April 2010. OBO Technical WG. "The OBO Foundry". The OBO Foundry. Retrieved 23 February 2017. "OBO Download Matrix". Archived from...

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Cell ontology

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animals. It is part of the Open Biomedical and Biological Ontologies (OBO) Foundry. The Cell Ontology identifiers and organizational structure are used...

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Bioinformatics

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added value from holistic and integrated analysis.[citation needed] The OBO Foundry was an effort to standardise certain ontologies. One of the most widespread...

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Disease Ontology

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extensible to meet community needs. The Disease Ontology is an OBO (Open Biomedical Ontologies) Foundry ontology. Disease Ontology Identifiers (DOIDs) consist...

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Michael Ashburner

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Scheuermann, R. H.; Shah, N.; Whetzel, P. L.; Lewis, S. (2007). "The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration"...

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Biocuration

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curation International Society for Biocuration Model Organism Database OBO Foundry "What is biocuration? | International Society for Biocuration". www.biocuration...

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Suzanna Lewis

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Scheuermann, R. H.; Shah, N.; Whetzel, P. L.; Lewis, S. (2007). "The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration"...

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Ontology for Biomedical Investigations

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part of the OBO Foundry and as such adheres to all the principles therein such as orthogonal coverage (i.e. clear delineation from other foundry member ontologies)...

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Genomic Standards Consortium

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stated above, the GSC is engaged in ontology development within the OBO Foundry. The GSC is also a founding member community of the Minimum Information...

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National Center for Biomedical Ontology

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PMID 22081220. Smith B, Ashburner M, Rosse C, et al. (November 2007). "The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration"...

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Plant ontology

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Botanical Garden Generic Model Organism Database Open Biomedical Ontologies OBO Foundry Walls, R. L.; Athreya, B.; Cooper, L.; Elser, J.; Gandolfo, M. A.; Jaiswal...

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Plant Phenology Ontology

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The Plant Phenology Ontology (PPO) is a collection of OBO Foundry ontologies that facilitate integration of heterogeneous data about seed plant phenology...

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Robert Arp

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ontologies in the Open Biological and Biomedical Ontologies Foundry, also known as the OBO Foundry. As a theoretical ontologist, having worked closely with...

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BRENDA tissue ontology

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, Scheuermann, R.H., Shah, N., Whetzel, P.L, Lewis, S. (2010): „The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration“...

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Ontology engineering

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Biomedical Ontologies (OBO), a 2006 initiative of the U.S. National Center for Biomedical Ontology, provides a common 'foundry' for various ontology initiatives...

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Basic Formal Ontology

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Ontology (BFO). Retrieved 2 December 2022. Open Biomedical Ontologies Foundry (OBO). Peter Morosoff, Ron Rudnicki, Jason Bryant, Robert Farrell and Barry...

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Cigar

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oxfordbibliographies.com. Oxford: Oxford University Press. doi:10.1093/obo/9780199730414-0141. Archived from the original on 28 October 2020. Retrieved...

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Treaty of the Triple Alliance

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Alliance)". Oxford Bibliographies. Oxford University Press. doi:10.1093/OBO/9780199766581-0159. Retrieved 27 November 2019. Cote, Stephen (2013). "A...

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Upper ontology

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Investigations (OBI) and other the ontologies of the Open Biomedical Ontologies Foundry. In addition to these examples, BFO and extensions are increasingly being...

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Famine

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Genocides". International Relations. Oxford University Press. doi:10.1093/OBO/9780199743292-0105. ISBN 978-0-19-974329-2. Archived from the original on...

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Juan Manuel de Rosas

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Manuel de Rosas". Oxford Bibliographies. Oxford University Press. doi:10.1093/OBO/9780199766581-0069. Archived from the original on 2 February 2017. Shumway...

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Pelham Horton Box

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Alliance)". Oxford Bibliographies. Oxford University Press. doi:10.1093/OBO/9780199766581-0159. Retrieved 25 October 2022. Commonwealth Fund (1926)....

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