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National Center for Biomedical Ontology information


The National Center for Biomedical Ontology (NCBO) is one of the National Centers for Biomedical Computing, and is funded by the NIH. Among the goals of the NCBO are to provide tools for discovery and access of biomedical ontologies, which are a type of controlled vocabulary designed to allow the expression of complex relationships in machine-readable form.[1]

The NCBO has facilities at Stanford University, the Mayo Clinic, the University of Victoria, and the University at Buffalo.[2]

Among the products associated with the NCBO are the Open Biomedical Ontologies.[3]

  1. ^ "About NCBO". Retrieved 2 June 2013.
  2. ^ Musen MA, Noy NF, Shah NH, et al. (2012). "The National Center for Biomedical Ontology". J Am Med Inform Assoc. 19 (2): 190–5. doi:10.1136/amiajnl-2011-000523. PMC 3277625. PMID 22081220.
  3. ^ Smith B, Ashburner M, Rosse C, et al. (November 2007). "The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration". Nat. Biotechnol. 25 (11): 1251–5. doi:10.1038/nbt1346. PMC 2814061. PMID 17989687.

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National Center for Biomedical Ontology

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The National Center for Biomedical Ontology (NCBO) is one of the National Centers for Biomedical Computing, and is funded by the NIH. Among the goals of...

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OBO Foundry

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establishes a set of principles for ontology development for creating a suite of interoperable reference ontologies in the biomedical domain. Currently, there...

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Ontology engineering

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restructure ontologies such as GO. Open Biomedical Ontologies (OBO), a 2006 initiative of the U.S. National Center for Biomedical Ontology, provides a...

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National Centers for Biomedical Computing

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still are supported.[citation needed] Center for Computational Biology National Center for Biomedical Ontology Simbios: Physics-based Simulation of Biological...

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Web Ontology Language

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The Web Ontology Language (OWL) is a family of knowledge representation languages for authoring ontologies. Ontologies are a formal way to describe taxonomies...

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Suzanna Lewis

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Biomedical Ontologies (OBO), National Center for Biomedical Ontology (NCBO), contributing to the Gene Ontology Sequence Ontology, Uberon anatomy ontologies, and...

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ontogenesis of those structures. National Center for Biomedical Ontology. "Lateral Accessory Lobe". Drosophila Gross Anatomy Ontology. Leland Stanford Junior University...

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BRENDA tissue ontology

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the German Cancer Research Center (DKFZ) in Heidelberg or the Bioportal platform of the National Center for Biomedical Ontology in Stanford, USA rely on...

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DNA annotation

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annotation pipelines for prokaryotic genomes are Bakta, Prokka and PGAP. The National Center for Biomedical Ontology develops tools for automated annotation...

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Adipose eyelid

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Glossary. Retrieved 2011-12-11. "Teleost Anatomy Ontology: Adipose eyelid". National Center for Biomedical Ontology. Retrieved 2011-12-11. "Smithsonian Tropical...

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Nanoinformatics

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Basic Formal Ontology framework and is implemented in the Web Ontology Language. It is hosted by the National Center for Biomedical Ontology and maintained...

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Unified Medical Language System

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viewed as a comprehensive thesaurus and ontology of biomedical concepts. UMLS further provides facilities for natural language processing. It is intended...

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Protein Information Resource

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1999, Cathy H. Wu joined the National Biomedical Research Foundation, and later on Georgetown University Medical Center, to head the bioinformatics efforts...

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Experimental factor ontology

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other resources which may also use these same ontologies, such as ChEBI and the Ontology for Biomedical Investigations. All data in the database is non-proprietary...

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Robert Arp

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(1996–2005), before doing postdoctoral research in ontology through the National Center for Biomedical Ontology with Mark Musen and Barry Smith at the University...

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The Monarch Initiative

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make biomedical knowledge exploration more efficient and effective. Mondo ontology is product of the Monarch Initiative. It provides ontology for diseases...

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PubMed Central

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been published in biomedical and life sciences journals. As one of the major research databases developed by the National Center for Biotechnology Information...

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Mark Musen

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Professor of Biomedical Informatics and of Biomedical Data Science at Stanford University, and Division Director of the Stanford Center for Biomedical Informatics...

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Biomedical text mining

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PMC 3128404. PMID 21515544. McCray AT (2003). "An upper-level ontology for the biomedical domain". Comparative and Functional Genomics. 4 (1): 80–4. doi:10...

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University of Twente

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politician – State Secretary for Security and justice Giancarlo Guizzardi, creator of the Unified Foundational Ontology and the OntoUML language Gom van...

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Gene set enrichment analysis

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of the bins (terms) in the gene ontology – a statistical test can be performed for each bin to see if it is enriched for the input genes. After the completion...

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David Botstein

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; Rubin, G. M.; Sherlock, G. (2000). "Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium". Nature Genetics. 25 (1): 25–29...

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