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Ontology for Biomedical Investigations information


The Ontology for Biomedical Investigations (OBI) is an open-access, integrated ontology for the description of biological and clinical investigations.[1] OBI provides a model for the design of an investigation, the protocols and instrumentation used, the materials used, the data generated and the type of analysis performed on it. The project is being developed as part of the OBO Foundry and as such adheres to all the principles therein such as orthogonal coverage (i.e. clear delineation from other foundry member ontologies) and the use of a common formal language. In OBI the common formal language used is the Web Ontology Language (OWL). As of March 2008, a pre-release version of the ontology was made available at the project's SVN repository.[2]

  1. ^ Bandrowski A, Brinkman R, Brochhausen M, Brush MH, Bug B, Chibucos MC, et al. (29 April 2016). Xue Y (ed.). "The Ontology for Biomedical Investigations". PLOS ONE. 11 (4): e0154556. Bibcode:2016PLoSO..1154556B. doi:10.1371/journal.pone.0154556. PMC 4851331. PMID 27128319.
  2. ^ Ontology for Biomedical Investigations (OBI) | Home

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Ontology for Biomedical Investigations

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The Ontology for Biomedical Investigations (OBI) is an open-access, integrated ontology for the description of biological and clinical investigations. OBI...

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CheBI ontology, the Disease Ontology, the Plant Ontology, the Sequence Ontology, the Ontology for Biomedical Investigations and the Protein Ontology. The...

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Basic Formal Ontology

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(intelligence) ontology, and industry ontologies. Example applications of BFO can be seen in the Ontology for Biomedical Investigations (OBI). In 2021, the standard...

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Upper ontology

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examples of ontologies extending BFO are the Ontology for Biomedical Investigations (OBI) and other the ontologies of the Open Biomedical Ontologies Foundry...

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Obi

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because it is considered common knowledge Ontology for Biomedical Investigations, an international cross-domain ontology effort Operation Blessing International...

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resources which may also use these same ontologies, such as ChEBI and the Ontology for Biomedical Investigations. All data in the database is non-proprietary...

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MGED Ontology FAQ". MO project website. Retrieved 2008-11-23. "Mapping terms between MO and Ontology for Biomedical Investigations". MGED Ontology Working...

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an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation". Journal of Biomedical Semantics...

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protein sequences databases PIR was established in 1984 by the National Biomedical Research Foundation as a resource to assist researchers and customers...

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PMC 3128404. PMID 21515544. McCray AT (2003). "An upper-level ontology for the biomedical domain". Comparative and Functional Genomics. 4 (1): 80–4. doi:10...

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Robert Arp

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(1996–2005), before doing postdoctoral research in ontology through the National Center for Biomedical Ontology with Mark Musen and Barry Smith at the University...

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particular interpretation of the world, a conscious or subconscious ontology, accounts for the phenomenon. Proponents of this idea argue that the active shooter...

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results. They are thought to acquire knowledge about syntax, semantics and "ontology" inherent in human language corpora, but also inaccuracies and biases present...

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encoding them with an ontology language for easy retrieval. Also called "ontology extraction", "ontology generation", and "ontology acquisition". Parsing...

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sequence information, functional annotation and the biomedical literature, allow prioritizing genes for future study in a more informed way. Such methods...

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