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Nonsense mutation information


In genetics, a nonsense mutation is a point mutation in a sequence of DNA that results in a nonsense codon, or a premature stop codon in the transcribed mRNA, and leads to a truncated, incomplete, and possibly nonfunctional protein product.[1] Nonsense mutations are not always harmful;[2] the functional effect of a nonsense mutation depends on many aspects, such as the location of the stop codon within the coding DNA.[2] For example, the effect of a nonsense mutation depends on the proximity of the nonsense mutation to the original stop codon, and the degree to which functional subdomains of the protein are affected.[3] As nonsense mutations leads to premature termination of polypeptide chains; they are also called chain termination mutations.[4]

Missense mutations differ from nonsense mutations since they are point mutations that exhibit a single nucleotide change to cause substitution of a different amino acid. A nonsense mutation also differs from a nonstop mutation, which is a point mutation that removes a stop codon. About 10% of patients facing genetic diseases have involvement with nonsense mutations.[5] Some of the diseases that these mutations can cause are Duchenne muscular dystrophy (DMD), cystic fibrosis (CF),[6] spinal muscular atrophy (SMA), cancers, metabolic diseases, and neurologic disorders.[5][7] The rate of nonsense mutations is variable from gene-to-gene and tissue-to-tissue, but gene silencing occurs in every patient with a nonsense mutation.[5]

  1. ^ Sharma, Jyoti; Keeling, Kim M.; Rowe, Steven M. (2020-08-15). "Pharmacological approaches for targeting cystic fibrosis nonsense mutations". European Journal of Medicinal Chemistry. 200: 112436. doi:10.1016/j.ejmech.2020.112436. ISSN 0223-5234. PMC 7384597. PMID 32512483.
  2. ^ a b Potapova, Nadezhda A. (2022-05-01). "Nonsense Mutations in Eukaryotes". Biochemistry (Moscow). 87 (5): 400–412. doi:10.1134/S0006297922050029. ISSN 1608-3040. PMID 35790376. S2CID 248793651.
  3. ^ Balasubramanian, Suganthi; Fu, Yao; Pawashe, Mayur; McGillivray, Patrick; Jin, Mike; Liu, Jeremy; Karczewski, Konrad J.; MacArthur, Daniel G.; Gerstein, Mark (2017-08-29). "Using ALoFT to determine the impact of putative loss-of-function variants in protein-coding genes". Nature Communications. 8 (1): 382. Bibcode:2017NatCo...8..382B. doi:10.1038/s41467-017-00443-5. ISSN 2041-1723. PMC 5575292. PMID 28851873.
  4. ^ Clark, David P.; Pazdernik, Nanette J.; McGehee, Michelle R. (2019), "Mutations and Repair", Molecular Biology, Elsevier, pp. 832–879, doi:10.1016/b978-0-12-813288-3.00026-4, ISBN 9780128132883, S2CID 239340633, retrieved 2022-12-02
  5. ^ a b c "Nonsense mutation correction in human diseases an approach for targeted medicine | WorldCat.org". www.worldcat.org. Retrieved 2022-12-02.
  6. ^ Guimbellot, Jennifer; Sharma, Jyoti; Rowe, Steven M. (November 2017). "Toward inclusive therapy with CFTR modulators: Progress and challenges". Pediatric Pulmonology. 52 (Suppl 48): S4–S14. doi:10.1002/ppul.23773. ISSN 8755-6863. PMC 6208153. PMID 28881097.
  7. ^ Benhabiles, Hana; Jia, Jieshuang; Lejeune, Fabrice (2016-01-01), Benhabiles, Hana; Jia, Jieshuang; Lejeune, Fabrice (eds.), "Chapter 2 - Pathologies Susceptible to be Targeted for Nonsense Mutation Therapies", Nonsense Mutation Correction in Human Diseases, Boston: Academic Press, pp. 77–105, ISBN 978-0-12-804468-1, retrieved 2022-12-02

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Nonsense mutation

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In genetics, a nonsense mutation is a point mutation in a sequence of DNA that results in a nonsense codon, or a premature stop codon in the transcribed...

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Mutation rate

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mutations are a class of mutations which are changes to a single base. Missense and Nonsense mutations are two subtypes of point mutations. The rate of these...

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Stop codon

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to as nonsense codons. A nonstop mutation, also called a stop-loss variant, is a point mutation that occurs within a stop codon. Nonstop mutations cause...

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Mutation

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latter case the mutation will have little or no effect on phenotype and therefore be neutral. A nonsense mutation is a point mutation in a sequence of...

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Point mutation

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in mutation rates for transitions (Alpha) and transversions (Beta). Transition mutations are about ten times more common than transversions. Nonsense mutations...

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Norovirus

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the most common norovirus strain, GII.4. Homozygous carriers of any nonsense mutation in the FUT2 gene are called non-secretors, as no ABH-antigen is produced...

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Suppressor mutation

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contains a mutation that changes a codon for an amino acid in a protein to the nonsense stop codon TAG (see stop codon and nonsense mutation). If, upon...

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Frameshift mutation

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inactive protein. This form of mutation is termed an early stop codon or a nonsense mutation. This is a genetic mutation at the level of nucleotide bases...

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Nonsense suppressor

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A nonsense suppressor is a factor which can inhibit the effect of the nonsense mutation. Nonsense suppressors can be generally divided into two classes:...

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Missense mutation

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DNA sequence. Two other types of nonsynonymous substitution are the nonsense mutations, in which a codon is changed to a premature stop codon that results...

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Genetic code

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"proofreading" ability of DNA polymerases. Missense mutations and nonsense mutations are examples of point mutations that can cause genetic diseases such as sickle-cell...

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Samoyed dog

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male Samoyeds. Also known as hereditary nephritis, it is caused by a nonsense mutation in codon 1027 of the COL4A5 gene on the X chromosome (glycine to stop...

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Silent mutation

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in the swap correlate. The premature insertion of a stop codon, a nonsense mutation, can alter the primary structure of a protein. In this case, a truncated...

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Duchenne muscular dystrophy

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Honeyman K, Agrawal S, et al. (July 1999). "Specific removal of the nonsense mutation from the mdx dystrophin mRNA using antisense oligonucleotides". Neuromuscular...

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Ataluren

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Union to treat people with Duchenne muscular dystrophy who have a nonsense mutation in the dystrophin gene, can walk, and are more than five years old...

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Rho factor

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needed] A nonsense mutation in one gene of an operon prevents the translation of subsequent genes in the unit. This effect is called mutational polarity...

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Methylenetetrahydrofolate reductase deficiency

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and have only minor effects on disease risk. Severe variants (from nonsense mutations) are rare. The common MTHFR deficiencies are usually asymptomatic...

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Leptin

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leptin deficiency. These eight mutations all cause extreme obesity in infancy, with hyperphagia. A nonsense mutation in the leptin gene that results...

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Myelinoid

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segment and the nodes of Ranvier during development. Patients with nonsense mutations in NFASC have abnormalities in the paranodal axo-glial junction (PNJ)...

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Donohue syndrome

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depending on the kind of cell. Known mutations to the gene which can cause Donohue syndrome include a nonsense mutation that resulted in early termination...

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Exon junction complex

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transcript contains a premature termination codon (PTC) due to a nonsense mutation. If this codon occurs prior to the EJC site, the EJC will remain bound...

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Coding region

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nonsense mutations, where base alterations in the coding region code for a premature stop codon, producing a shorter final protein. Point mutations,...

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Cytochrome c oxidase subunit I

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associated with mitochondrial myopathy. A G5920A mutation, and a heteroplasmic G6708A nonsense mutation have been associated with COX deficiency and RM-MT...

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MRNA surveillance

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Liebhaber SA, Romão L (July 2004). "Nonsense mutations in close proximity to the initiation codon fail to trigger full nonsense-mediated mRNA decay". The Journal...

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