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Silent mutation information


Point substitution mutations of a codon, classified by their impact on protein sequence

Silent mutations are mutations in DNA that do not have an observable effect on the organism's phenotype. They are a specific type of neutral mutation. The phrase silent mutation is often used interchangeably with the phrase synonymous mutation; however, synonymous mutations are not always silent, nor vice versa.[1][2][3][4][5] Synonymous mutations can affect transcription, splicing, mRNA transport, and translation, any of which could alter phenotype, rendering the synonymous mutation non-silent.[3] The substrate specificity of the tRNA to the rare codon can affect the timing of translation, and in turn the co-translational folding of the protein.[1] This is reflected in the codon usage bias that is observed in many species. Mutations that cause the altered codon to produce an amino acid with similar functionality (e.g. a mutation producing leucine instead of isoleucine) are often classified as silent; if the properties of the amino acid are conserved, this mutation does not usually significantly affect protein function.[6]

  1. ^ a b Kimchi-Sarfaty C, Oh JM, Kim IW, Sauna ZE, Calcagno AM, Ambudkar SV, Gottesman MM (January 2007). "A "silent" polymorphism in the MDR1 gene changes substrate specificity". Science. 315 (5811): 525–8. Bibcode:2007Sci...315..525K. doi:10.1126/science.1135308. PMID 17185560. S2CID 15146955.
  2. ^ Chamary JV, Parmley JL, Hurst LD (February 2006). "Hearing silence: non-neutral evolution at synonymous sites in mammals". Nature Reviews. Genetics. 7 (2): 98–108. doi:10.1038/nrg1770. PMID 16418745. S2CID 25713689.
  3. ^ a b Goymer P (February 2007). "Synonymous mutations break their silence". Nature Reviews Genetics. 8 (2): 92. doi:10.1038/nrg2056. S2CID 29882152.
  4. ^ Zhou T, Ko EA, Gu W, Lim I, Bang H, Ko JH (31 October 2012). "Non-silent story on synonymous sites in voltage-gated ion channel genes". PLOS ONE. 7 (10): e48541. Bibcode:2012PLoSO...748541Z. doi:10.1371/journal.pone.0048541. PMC 3485311. PMID 23119053.
  5. ^ Graur D (2003). "Single Base Mutation" (PDF). In Cooper DN (ed.). Nature Encyclopedia of the Human Genome. MacMillan. ISBN 978-0333803868.
  6. ^ Alberts B, Johnson A, Lewis J, Raff M, Roberts K, Walter P (2007). Molecular Biology of the Cell. Garland Science. p. 264. ISBN 978-1-136-84442-3.

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Silent mutation

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Silent mutations are mutations in DNA that do not have an observable effect on the organism's phenotype. They are a specific type of neutral mutation...

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Point mutation

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non-conservative (missense) mutation. Silent mutations code for the same amino acid (a "synonymous substitution"). A silent mutation does not affect the functioning...

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Mutation

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In biology, a mutation is an alteration in the nucleic acid sequence of the genome of an organism, virus, or extrachromosomal DNA. Viral genomes contain...

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Coding region

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phenotype. There are various forms of mutations that can occur in coding regions. One form is silent mutations, in which a change in nucleotides does...

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Synonymous substitution

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substitutions and mutations affecting noncoding DNA are often considered silent mutations; however, it is not always the case that the mutation is silent. Since...

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Neutral mutation

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genetics, mutations in which natural selection does not affect the spread of the mutation in a species are termed neutral mutations. Neutral mutations that...

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Point accepted mutation

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include all point mutations in the DNA of an organism. In particular, silent mutations are not point accepted mutations, nor are mutations that are lethal...

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Genetics

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Mendel published. In his third law, he developed the basic principles of mutation (he can be considered a forerunner of Hugo de Vries). Festetics argued...

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Missense mutation

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In genetics, a missense mutation is a point mutation in which a single nucleotide change results in a codon that codes for a different amino acid. It is...

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Mutation rate

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single type of mutation; there are many different types of mutations. Mutation rates are given for specific classes of mutations. Point mutations are a class...

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Nonsynonymous substitution

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substitutions, which do not alter amino acid sequences and are (sometimes) silent mutations. As nonsynonymous substitutions result in a biological change in the...

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Gene polymorphism

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to be clear when discussing mutations whether it is a somatic mutation or gemline mutation. In the case of silent mutations there isn't a change in fitness...

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Genetic divergence

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speciation). The genetic differences among divergent populations can involve silent mutations (that have no effect on the phenotype) or give rise to significant...

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Genetic code

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that errors in the third position of the triplet codon cause only a silent mutation or an error that would not affect the protein because the hydrophilicity...

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Speciation

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very seldom advantageous. In most instances, they indicate a (non-silent) mutation, which is almost certain to be deleterious. It therefore behooves sexual...

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Golden Gate Cloning

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sure that the introduced mutation will not affect the genetic function encoded by the sequence of interest. A silent mutation in the coding sequence is...

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Phenotype

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level of the gene that affect an organism's fitness. For example, silent mutations that do not change the corresponding amino acid sequence of a gene...

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Mutagen

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organism and thus increases the frequency of mutations above the natural background level. As many mutations can cause cancer in animals, such mutagens...

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Nucleic acid sequence

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difference in acceptance rates between silent mutations that do not alter the meaning of a given codon and other mutations that result in a different amino...

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Gene duplication

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selective pressure—that is, mutations of it have no deleterious effects to its host organism. If one copy of a gene experiences a mutation that affects its original...

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Transversion

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Transversion, in molecular biology, refers to a point mutation in DNA in which a single (two ring) purine (A or G) is changed for a (one ring) pyrimidine...

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Gene

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necessarily fitter. Most mutations within genes are neutral, having no effect on the organism's phenotype (silent mutations). Some mutations do not change the...

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Mutant protein

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mutagenesis Phi value analysis missense mutation nonsense mutation point mutation frameshift mutation silent mutation single-nucleotide polymorphism Wang...

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Exonic splicing enhancer

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clinically significant because synonymous point mutations previously thought to be silent mutations located in an ESEs can lead to exon skipping and...

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