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NCBI Epigenomics information


NCBI Epigenomics
Content
Descriptionepigenomic data sets.
Contact
Research centerNational Center for Biotechnology Information
AuthorsIan M Fingerman
Primary citationFingerman & al. (2011)[1]
Release date2010
Access
Websitehttps://www.ncbi.nlm.nih.gov/epigenomics

The Epigenomics database at the National Center for Biotechnology Information was a database for whole-genome epigenetics data sets.[1] It was retired on 1 June 2016.

  1. ^ a b Fingerman, Ian M; McDaniel Lee; Zhang Xuan; Ratzat Walter; Hassan Tarek; Jiang Zhifang; Cohen Robert F; Schuler Gregory D (Jan 2011). "NCBI Epigenomics: a new public resource for exploring epigenomic data sets". Nucleic Acids Res. 39 (Database issue): D908–12. doi:10.1093/nar/gkq1146. PMC 3013719. PMID 21075792.

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NCBI Epigenomics

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It was retired on 1 June 2016. The Epigenomics database of the National Center for Biotechnology Information (NCBI) at the National Institutes of Health...

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National Center for Biotechnology Information

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databases include the NCBI Epigenomics database. All these databases are available online through the Entrez search engine. NCBI was directed by David...

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Epigenome

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Homepage NCBI Epigenomics Hub NCBI Gene Expression Omnibus Epigenomics The Human Epigenome Atlas Roadmap Epigenomics Visualization Hub Roadmap Epigenomics Visualization...

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Manolis Kellis

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genetics, epigenomics, gene regulation, genome evolution, disease mechanism, and single-cell genomics. He co-led the NIH Roadmap Epigenomics Project effort...

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BPIFB6

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analysis of DNA methylation reveals a rectal cancer-specific epigenomic signature". Epigenomics. 8 (9): 1193–1207. doi:10.2217/epi-2016-0044. PMID 27529132...

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Clostridioides difficile

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Garrett EM, Trzilova D, Kim A, Sekulovic O, et al. (January 2020). "Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase...

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African clawed frog

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VG, Chu S, Chaturvedi P, Zorn AM, Vize PD (2018). "Xenbase: a genomic, epigenomic and transcriptomic model organism database". Nucleic Acids Research. 46...

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Consensus CDS Project

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consistently represented by the National Center for Biotechnology Information (NCBI), Ensembl, and UCSC Genome Browser. The integrity of the CCDS dataset is...

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List of biological databases

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prokaryotes based on 16S ribosomal RNA gene sequences NCBI Taxonomy: a taxonomic database operated by NCBI and concentrating on all taxa for which DNA sequences...

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Computational biology

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methods and via large consortia projects such as ENCODE and the Roadmap Epigenomics Project. Understanding how individual genes contribute to the biology...

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DNA methylation

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1005854. PMID 26870957. PMC 4752239 Oliveira PH (August 2021). "Bacterial Epigenomics: Coming of Age". mSystems. 6 (4): e0074721. doi:10.1128/mSystems.00747-21...

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Genomics

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bioinformatics, i.e. determining protein function from its 3D structure. Epigenomics is the study of the complete set of epigenetic modifications on the genetic...

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Oliver Wyman

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the British Financial Services Authority Oliver Schacht, former CFO of Epigenomics AG Michael Schumann, former CEO of German Arques Industries AG, predecessor...

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Mycobacterium tuberculosis

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Tuberculosis research Photoblog about Tuberculosis "Mycobacterium tuberculosis". NCBI Taxonomy Browser. Database on Mycobacterium tuberculosis genetics...

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LINE1

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first-episode schizophrenia patients with the history of childhood trauma". Epigenomics. 7 (8): 1275–1285. doi:10.2217/epi.15.68. PMID 26212695. Petrosino G...

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Proteomics

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proteomics can be seen as complementary to genomics, transcriptomics, epigenomics, metabolomics, and other -omics approaches in integrative analyses attempting...

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HHIPL1

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1 [Homo sapiens] - Gene". National Center for Biotechnology Information (NCBI). Retrieved 2016-10-06. "BioGPS - your Gene Portal System". biogps.org. Retrieved...

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Western clawed frog

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Biology vol. 20, p. R263–4 "Xenopus tropicalis (ID 80) - Genome - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2020-12-01. Gabaldón, Toni; Koonin, Eugene V...

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Xenopus

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Burns KA, Wang DZ, Fisher ME, et al. (January 2018). "Xenbase: a genomic, epigenomic and transcriptomic model organism database". Nucleic Acids Research. 46...

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MECP2

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Database GeneReview/NIH/UW entry on MECP2-Related Disorders GeneReviews/NCBI/NIH/UW entry on MECP2 Duplication Syndrome UK Site for Families Affected...

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Cancer systems biology

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incorporates a spectrum of “omics” technologies (genomics, proteomics, epigenomics, etc.) and molecular imaging, to generate computational algorithms and...

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RAD21

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cohesin complex component [Homo sapiens]". NCBI gene. National Center for Biotechnology Information (NCBI), U.S. National Library of Medicine. Panigrahi...

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DNA methyltransferase

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"TRDMT1 tRNA aspartic acid methyltransferase 1 (Homo sapiens)". Entrez Gene. NCBI. 2010-11-01. Retrieved 2010-11-07. Yang X, Han H, De Carvalho DD, Lay FD...

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FAM167A

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numeric names: authors list (link) "FAM167A - View on Genome - Epigenomics - NCBI". www.ncbi.nlm.nih.gov. Archived from the original on 2014-05-08. National...

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Gene expression

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SAGE DNA microarray Tiling array RNA-Seq Gene expression omnibus (GEO) at NCBI Expression Atlas at the EBI Bgee Bgee at the SIB Swiss Institute of Bioinformatics...

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Pharmacoepigenetics

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medicine. The development of the Human Epigenome Project and advances in epigenomics has given rise to a burgeoning field known as pharmacoepigenetics. Pharmacoepigenetics...

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FANTOM

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while both nucleic acid and protein databases such as SwissProt, UniGene and NCBI-nr were utilized. Concurrently, a collaboration with the Mouse Genome Informatics...

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