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Exosite information


An exosite is a secondary binding site, remote from the active site, on an enzyme or other protein.[1]

This is similar to allosteric sites, but differs in the fact that, in order for an enzyme to be active, its exosite typically must be occupied.[2] Exosites have recently become a topic of increased interest in biomedical research as potential drug targets.[3][4]

  1. ^ Yegneswaran, S.; Tiefenbrunn, T. K.; Fernández, J. A.; Dawson, P. E. (October 2007). "Manipulation of thrombin exosite I, by ligand-directed covalent modification". Journal of Thrombosis and Haemostasis. 5 (10): 2062–2069. doi:10.1111/j.1538-7836.2007.02712.x. PMID 17883702. S2CID 38198958.
  2. ^ Lockett, J. M.; Sheehan, J. P.; Mast, A. E. (July 2003). "Binding at two distinct exosites is required for activation of prothrombin by prothrombinase". Journal of Thrombosis and Haemostasis. 1 (Supplement 1). Archived from the original on 2004-11-26.
  3. ^ Müller, Jens; Isermann, Berend; Dücker, Christina; Salehi, Mohammad; Meyer, Moritz; Friedrich, Max; Madhusudhan, Thati; Oldenburg, Johannes; Mayer, Günter; Pötzsch, Bernd (April 2009). "An Exosite-Specific ssDNA Aptamer Inhibits the Anticoagulant Functions of Activated Protein C and Enhances Inhibition by Protein C Inhibitor". Chemistry & Biology. 16 (4): 442–451. doi:10.1016/j.chembiol.2009.03.007. PMID 19389630.
  4. ^ Serine Endopeptidases: Advances in Research and Application: 2011 Edition. ScholarlyEditions. 2012. ISBN 978-1-4649-2658-7.[page needed]

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Exosite

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An exosite is a secondary binding site, remote from the active site, on an enzyme or other protein. This is similar to allosteric sites, but differs in...

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Direct thrombin inhibitor

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Bivalent DTIs (hirudin and analogs) bind both to the active site and exosite 1, while univalent DTIs bind only to the active site. The third class of...

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Tirofiban

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"Non-peptide fibrinogen receptor antagonists. 1. Discovery and design of exosite inhibitors". Journal of Medicinal Chemistry. 35 (24). American Chemical...

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Thrombin

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WITH THE EXOSITE INHIBITOR HIRUGEN AND ACTIVE SITE INHIBITOR PHCH2OCO-D-DPA-PRO-BOROMPG 1aix: HUMAN ALPHA-THROMBIN TERNARY COMPLEX WITH EXOSITE INHIBITOR...

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Hirudin

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domain makes numerous electrostatic interactions with an anion-binding exosite of thrombin, while the last five residues are in a helical loop that forms...

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Discovery and development of direct thrombin inhibitors

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Ser-195. Thrombin also has two exosites (1 and 2). Thrombin is a little different from other serine proteases as exosite 1 is anion-binding and binds to...

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Haemadin

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2000). "Crystal structure of the human alpha-thrombin-haemadin complex: an exosite II-binding inhibitor". EMBO J. 19 (21): 5650–60. doi:10.1093/emboj/19.21...

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Eunice Cho

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Miller, C.J., Lou, H.J., Turk, B.E. Identification of a Substrate-selective Exosite within the Metalloproteinase Anthrax Lethal Factor. J. Biol. Chem. 2017...

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Factor VII

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TISSUE FACTOR 1dva: Crystal Structure of the Complex Between the Peptide Exosite Inhibitor E-76 and Coagulation Factor VIIA 1f7e: THE FIRST EGF-LIKE DOMAIN...

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Protein C

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phospholipids for anticoagulation and to EPCR for cytoprotection. One particular exosite augments protein C's ability to inactivate Factor Va efficiently. Another...

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Heparin

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factor Xa independent of the reactive center loop sequence. Evidence for an exosite determinant of factor Xa specificity in heparin-activated antithrombin"...

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Batroxobin

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Thrombin acts on two exosites to fibrinogen. Exosite 1 mediates the binding of thrombin to the Aα- and Bβ-chains, and exosite 2 causes an interaction...

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Aptamer

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aptamers. Anti-thrombin aptamers – Oligonucleotides which recognize the exosites of human thrombin Deoxyribozyme – DNA oligonucleotides that can perform...

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Antithrombin

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antithrombin reactivity with factor IXa by generating new interaction exosites". Biochemistry. 42 (27): 8143–8152. doi:10.1021/bi034363y. PMID 12846563...

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Bivalirudin

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specifically binding both to the catalytic site and to the anion-binding exosite of circulating and clot-bound thrombin. Thrombin is a serine proteinase...

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Epitope mapping

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spectrometry at nearly single amino acid residue resolution reveals novel exosites on ADAMTS13 critical for substrate recognition and mechanism of autoimmune...

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Degradomics

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protease-substrate discovery. As protease exosites play roles in protein-protein recognition and interaction, biologists have used exosites as tools to screen for protease...

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Serpin

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both of these coagulation proteases also contain binding sites (called exosites) for heparin. Heparin, therefore, also acts as a template for binding of...

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Granzyme B

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Protein L4-100K from adenoviruses can also inhibit granzyme B by binding at exosites and specific binding pockets. L4-100K is an assembly protein that can transport...

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Acrosin

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modifications) on its surface region, that has been termed the "anion binding exosite." This site consists of an area of excess positive charge, which has been...

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Cerastocytin

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sequences protrude from the globular structures of the proteases. Since this exosite was shown to be involved in the platelet aggregating activity of thrombin...

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Systematic evolution of ligands by exponential enrichment

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reaction Anti-thrombin aptamers – Oligonucleotides which recognize the exosites of human thrombin Bacterial one-hybrid system – Method for identifying...

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Discovery and development of beta2 agonists

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for LABAs. The first explained the long action in terms of a putative “exosite” or “exoceptor” distinct from the β2-adrenoreceptor that long aliphatic...

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Siderocalin

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1997). "Structure of the thrombin complex with triabin, a lipocalin-like exosite-binding inhibitor derived from a triatomine bug". Proceedings of the National...

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Prothrombinase

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Development of Idraparinux was discontinued. Krishnaswamy S (January 2005). "Exosite-driven substrate specificity and function in coagulation". J. Thromb. Haemost...

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