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DNA read errors information


In bioinformatics, a DNA read error occurs when a sequence assembler changes one DNA base for a different base. The reads from the sequence assembler can then be used to create a de Bruijn graph, which can be used in various ways to find errors.

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DNA read errors

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In bioinformatics, a DNA read error occurs when a sequence assembler changes one DNA base for a different base. The reads from the sequence assembler can...

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DNA sequencer

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data may also contain errors, caused by limitations in the DNA sequencing technique or by errors during PCR amplification. DNA sequencer manufacturers...

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DNA sequencing

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it was the first of its class to sequence non-amplified DNA, thus preventing any read errors associated with amplification steps. In 2009 a human genome...

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DNA digital data storage

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optimal methods are those that make economical use of DNA and protect against errors. If the message DNA is intended to be stored for a long period of time...

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Sequence assembly

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a longer DNA sequence in order to reconstruct the original sequence. This is needed as DNA sequencing technology might not be able to 'read' whole genomes...

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Error

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preferably avoid the effects of error, whether unintentional or not. Such errors in a system can be latent design errors that may go unnoticed for years...

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DNA replication

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molecular biology, DNA replication is the biological process of producing two identical replicas of DNA from one original DNA molecule. DNA replication occurs...

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Sanger sequencing

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short-read sequencing technologies (like Illumina) in that it can produce DNA sequence reads of > 500 nucleotides and maintains a very low error rate with...

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Duplex sequencing

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errors. The errors are introduced during sample preparation and sequencing such as polymerase chain reaction, sequencing, and image analysis errors....

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Framing error

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errors as a result of this bias are commonly called framing errors. This disambiguation page lists articles associated with the title Framing error....

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DNA

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epoxide and aflatoxin form DNA adducts that induce errors in replication. Nevertheless, due to their ability to inhibit DNA transcription and replication...

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DNA methylation

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DNA methylation is a biological process by which methyl groups are added to the DNA molecule. Methylation can change the activity of a DNA segment without...

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Ancient DNA

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DNA (aDNA) is DNA isolated from ancient specimens. Due to degradation processes (including cross-linking, deamination and fragmentation) ancient DNA is...

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Biomedical data science

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often associated with biomedical data including noisy data, such as DNA read errors, and privacy rights of the research subjects. The HGP, completed in...

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Phred quality score

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characters alongside the read sequences. Phred quality scores have become widely accepted to characterize the quality of DNA sequences, and can be used...

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Massive parallel sequencing

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and Mitra. Protocols requiring DNA amplification are often cumbersome to implement and may introduce sequencing errors. The preparation of single-molecule...

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DNA barcoding

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DNA barcoding is a method of species identification using a short section of DNA from a specific gene or genes. The premise of DNA barcoding is that by...

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DNA polymerase

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from a single original DNA duplex. During this process, DNA polymerase "reads" the existing DNA strands to create two new strands that match the existing...

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Environmental DNA

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Environmental DNA or eDNA is DNA that is collected from a variety of environmental samples such as soil, seawater, snow or air, rather than directly sampled...

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DNA profiling

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DNA profiling (also called DNA fingerprinting and genetic fingerprinting) is the process of determining an individual's deoxyribonucleic acid (DNA) characteristics...

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Shotgun sequencing

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sequencing, DNA is broken up randomly into numerous small segments, which are sequenced using the chain termination method to obtain reads. Multiple overlapping...

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Circulating tumor DNA

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sensitivity of ctDNA detection. However, amplification through PCR can introduce errors given the inherent error rate of DNA polymerases. Errors introduced...

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Transmission electron microscopy DNA sequencing

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to image the labeled DNA molecule. In theory, transmission electron microscopy DNA sequencing could provide extremely long read lengths, but the issue...

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