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DNA polymerase information


DNA-directed DNA polymerase
3D structure of the DNA-binding helix-turn-helix motifs in human DNA polymerase beta (based on PDB file 7ICG)
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EC no.2.7.7.7
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A DNA polymerase is a member of a family of enzymes that catalyze the synthesis of DNA molecules from nucleoside triphosphates, the molecular precursors of DNA. These enzymes are essential for DNA replication and usually work in groups to create two identical DNA duplexes from a single original DNA duplex. During this process, DNA polymerase "reads" the existing DNA strands to create two new strands that match the existing ones.[1][2][3][4][5][6] These enzymes catalyze the chemical reaction

deoxynucleoside triphosphate + DNAn ⇌ pyrophosphate + DNAn+1.

DNA polymerase adds nucleotides to the three prime (3')-end of a DNA strand, one nucleotide at a time. Every time a cell divides, DNA polymerases are required to duplicate the cell's DNA, so that a copy of the original DNA molecule can be passed to each daughter cell. In this way, genetic information is passed down from generation to generation.

Before replication can take place, an enzyme called helicase unwinds the DNA molecule from its tightly woven form, in the process breaking the hydrogen bonds between the nucleotide bases. This opens up or "unzips" the double-stranded DNA to give two single strands of DNA that can be used as templates for replication in the above reaction.

  1. ^ Bollum FJ (August 1960). "Calf thymus polymerase". The Journal of Biological Chemistry. 235 (8): 2399–2403. doi:10.1016/S0021-9258(18)64634-4. PMID 13802334.
  2. ^ Falaschi A, Kornberg A (April 1966). "Biochemical studies of bacterial sporulation. II. Deoxy- ribonucleic acid polymerase in spores of Bacillus subtilis". The Journal of Biological Chemistry. 241 (7): 1478–1482. doi:10.1016/S0021-9258(18)96736-0. PMID 4957767.
  3. ^ Lehman IR, Bessman MJ, Simms ES, Kornberg A (July 1958). "Enzymatic synthesis of deoxyribonucleic acid. I. Preparation of substrates and partial purification of an enzyme from Escherichia coli". The Journal of Biological Chemistry. 233 (1): 163–170. doi:10.1016/S0021-9258(19)68048-8. PMID 13563462.
  4. ^ Richardson CC, Schildkraut CL, Aposhian HV, Kornberg A (January 1964). "Enzymatic synthesis of deoxyribonucleic acid. XIV. Further purification and properties of deoxyribonucleic acid polymerase of Escherichia coli". The Journal of Biological Chemistry. 239: 222–232. doi:10.1016/S0021-9258(18)51772-5. PMID 14114848.
  5. ^ Schachman HK, Adler J, Radding CM, Lehman IR, Kornberg A (November 1960). "Enzymatic synthesis of deoxyribonucleic acid. VII. Synthesis of a polymer of deoxyadenylate and deoxythymidylate". The Journal of Biological Chemistry. 235 (11): 3242–3249. doi:10.1016/S0021-9258(20)81345-3. PMID 13747134.
  6. ^ Zimmerman BK (May 1966). "Purification and properties of deoxyribonucleic acid polymerase from Micrococcus lysodeikticus". The Journal of Biological Chemistry. 241 (9): 2035–2041. doi:10.1016/S0021-9258(18)96662-7. PMID 5946628.

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DNA polymerase

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A DNA polymerase is a member of a family of enzymes that catalyze the synthesis of DNA molecules from nucleoside triphosphates, the molecular precursors...

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DNA polymerase I

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DNA polymerase I (or Pol I) is an enzyme that participates in the process of prokaryotic DNA replication. Discovered by Arthur Kornberg in 1956, it was...

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RNA polymerase

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In molecular biology, RNA polymerase (abbreviated RNAP or RNApol), or more specifically DNA-directed/dependent RNA polymerase (DdRP), is an enzyme that...

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DNA polymerase III holoenzyme

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DNA polymerase III holoenzyme is the primary enzyme complex involved in prokaryotic DNA replication. It was discovered by Thomas Kornberg (son of Arthur...

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Polymerase chain reaction

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The polymerase chain reaction (PCR) is a method widely used to make millions to billions of copies of a specific DNA sample rapidly, allowing scientists...

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DNA polymerase II

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DNA polymerase II (also known as DNA Pol II or Pol II) is a prokaryotic DNA-dependent DNA polymerase encoded by the PolB gene. DNA Polymerase II is an...

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Polymerase

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DNA polymerase (DNA-directed DNA polymerase, DdDP) Family A: DNA polymerase I; Pol γ, θ, ν Family B: DNA polymerase II; Pol α, δ, ε, ζ Family C: DNA polymerase...

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Pfu DNA polymerase

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Pfu DNA polymerase is an enzyme found in the hyperthermophilic archaeon Pyrococcus furiosus, where it functions to copy the organism's DNA during cell...

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DNA polymerase alpha

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DNA polymerase alpha also known as Pol α is an enzyme complex found in eukaryotes that is involved in initiation of DNA replication. The DNA polymerase...

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Taq polymerase

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Taq polymerase is a thermostable DNA polymerase I named after the thermophilic eubacterial microorganism Thermus aquaticus, from which it was originally...

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DNA polymerase delta

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DNA polymerase delta (DNA Pol δ) is an enzyme complex found in eukaryotes that is involved in DNA replication and repair. The DNA polymerase delta complex...

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Reverse transcriptase

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and DNA-dependent DNA polymerase activity. Collectively, these activities enable the enzyme to convert single-stranded RNA into double-stranded cDNA. In...

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DNA replication

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synthesized partner strand. DNA polymerases are a family of enzymes that carry out all forms of DNA replication. DNA polymerases in general cannot initiate...

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T7 DNA polymerase

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T7 DNA polymerase is an enzyme used during the DNA replication of the T7 bacteriophage. During this process, the DNA polymerase “reads” existing DNA strands...

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DNA polymerase beta

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DNA polymerase beta, also known as POLB, is an enzyme present in eukaryotes. In humans, it is encoded by the POLB gene. In eukaryotic cells, DNA polymerase...

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DNA polymerase epsilon

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DNA polymerase epsilon is a member of the DNA polymerase family of enzymes found in eukaryotes. It is composed of the following four subunits: POLE (central...

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DNA clamp

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of the DNA polymerase III holoenzyme, the clamp protein binds DNA polymerase and prevents this enzyme from dissociating from the template DNA strand....

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Eukaryotic DNA replication

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genome. DNA replication is the action of DNA polymerases synthesizing a DNA strand complementary to the original template strand. To synthesize DNA, the...

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DNA virus

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A DNA virus is a virus that has a genome made of deoxyribonucleic acid (DNA) that is replicated by a DNA polymerase. They can be divided between those...

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DNA polymerase eta

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DNA polymerase eta (Pol η), is a protein that in humans is encoded by the POLH gene. DNA polymerase eta is a eukaryotic DNA polymerase involved in the...

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DNA repair

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switching out regular DNA polymerases for specialized translesion polymerases (i.e. DNA polymerase IV or V, from the Y Polymerase family), often with larger...

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Okazaki fragments

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helicase, creating what is known as the DNA replication fork. Following this fork, DNA primase and DNA polymerase begin to act in order to create a new...

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DNA

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region of DNA called the terminator, where it halts and detaches from the DNA. As with human DNA-dependent DNA polymerases, RNA polymerase II, the enzyme...

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Nuclear DNA

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complex DNA polymerase engages the separated portion of the molecule and initiates the process of replication. DNA polymerase can only connect new DNA nucleotides...

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Terminal deoxynucleotidyl transferase

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transferase (TdT), also known as DNA nucleotidylexotransferase (DNTT) or terminal transferase, is a specialized DNA polymerase expressed in immature, pre-B...

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DNA polymerase IV

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DNA polymerase IV is a prokaryotic polymerase that is involved in mutagenesis and is encoded by the dinB gene. It exhibits no 3′→5′ exonuclease (proofreading)...

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