Virome refers to the assemblage of viruses[1][2] that is often investigated and described by metagenomic sequencing of viral nucleic acids[3] that are found associated with a particular ecosystem, organism or holobiont. The word is frequently used to describe environmental viral shotgun metagenomes. Viruses, including bacteriophages, are found in all environments, and studies of the virome have provided insights into nutrient cycling,[4][5] development of immunity,[6] and a major source of genes through lysogenic conversion.[7] Also, the human virome has been characterized in nine organs (colon, liver, lung, heart, brain, kidney, skin, blood, hair) of 31 Finnish individuals using qPCR and NGS methodologies.[8]
^Anderson NG, Gerin JL, Anderson NL (July 2003). "Global screening for human viral pathogens". Emerging Infectious Diseases. 9 (7): 768–774. doi:10.3201/eid0907.030004. PMC 3023425. PMID 12890315.
^Zárate S, Taboada B, Yocupicio-Monroy M, Arias CF (November 2017). "Human Virome". Archives of Medical Research. 48 (8): 701–716. doi:10.1016/j.arcmed.2018.01.005. PMID 29398104.
^McDaniel L, Breitbart M, Mobberley J, Long A, Haynes M, Rohwer F, Paul JH (September 2008). "Metagenomic analysis of lysogeny in Tampa Bay: implications for prophage gene expression". PLOS ONE. 3 (9): e3263. Bibcode:2008PLoSO...3.3263M. doi:10.1371/journal.pone.0003263. PMC 2533394. PMID 18810270.
^Wilhelm SW, Suttle CA (1999). "Viruses and Nutrient Cycles in the Sea". BioScience. 49 (10): 781–788. doi:10.2307/1313569. ISSN 1525-3244. JSTOR 1313569.
^Wegley L, Edwards R, Rodriguez-Brito B, Liu H, Rohwer F (November 2007). "Metagenomic analysis of the microbial community associated with the coral Porites astreoides". Environmental Microbiology. 9 (11): 2707–2719. Bibcode:2007EnvMi...9.2707W. doi:10.1111/j.1462-2920.2007.01383.x. PMID 17922755.
^Barr JJ, Auro R, Furlan M, Whiteson KL, Erb ML, Pogliano J, et al. (June 2013). "Bacteriophage adhering to mucus provide a non-host-derived immunity". Proceedings of the National Academy of Sciences of the United States of America. 110 (26): 10771–10776. Bibcode:2013PNAS..11010771B. doi:10.1073/pnas.1305923110. PMC 3696810. PMID 23690590.
^Sharon I, Battchikova N, Aro EM, Giglione C, Meinnel T, Glaser F, et al. (July 2011). "Comparative metagenomics of microbial traits within oceanic viral communities". The ISME Journal. 5 (7): 1178–1190. Bibcode:2011ISMEJ...5.1178S. doi:10.1038/ismej.2011.2. PMC 3146289. PMID 21307954.
^Pyöriä L, Pratas D, Toppinen M, Hedman K, Sajantila A, Perdomo MF (2023). "Unmasking the tissue-resident eukaryotic DNA virome in humans". Nucleic Acids Research. 51 (7): 3223–3239. doi:10.1093/nar/gkad199. PMC 10123123. PMID 36951096.
Virome refers to the assemblage of viruses that is often investigated and described by metagenomic sequencing of viral nucleic acids that are found associated...
The human virome is the total collection of viruses in and on the human body. Viruses in the human body may infect both human cells and other microbes...
and nitrogen cycling. Interestingly, a recent analysis of Pacific Ocean Virome data identified niche-specialised AMGs that contribute to depth-stratified...
The bat virome is the group of viruses associated with bats. Bats host a diverse array of viruses, including all seven types described by the Baltimore...
subcategory of virome, which is all of the viruses that are associated with a host or environment. Phages make up the majority of most viromes and are currently...
part of the gut flora, but less is known about their activities. The human virome is mostly bacteriophages. There are common patterns of microbiome composition...
viruses and their reservoirs. One such surveillance program is the Global Virome Project (GVP) an international collaborative research initiative based at...
viruses in an organism or habitat is called the virome; for example, all human viruses constitute the human virome. A novel virus is one that has not previously...
unknown microbes are referred to as the microbial dark matter, the dark virome, or dark matter fungi. Such sequences are not rare. It has been estimated...
research in microbiome data science include the exploration of Earth’s virome, the identification of new bacterial phyla the prediction of novel folds...
viral family through a collection of 81 new complete genomes assembled from virome reads". PLOS ONE. 7 (7): e40418. Bibcode:2012PLoSO...740418R. doi:10.1371/journal...
has evolved since the original formulations. Holobionts include the host, virome, microbiome, and any other organisms which contribute in some way to the...
Anellovirus species are highly prevalent and genetically diverse. Their virome has been present in most humans. They enter in the cell early in life and...
Severe acute respiratory syndrome (SARS) is a viral respiratory disease of zoonotic origin caused by the virus SARS-CoV-1, the first identified strain...
cell Non-cellular life Synthetic virus Viral vector Helper dependent virus ?Nanobacterium ?Nanobe Cancer cell HeLa Clonally transmissible cancer Virome...
Ebola, also known as Ebola virus disease (EVD) and Ebola hemorrhagic fever (EHF), is a viral hemorrhagic fever in humans and other primates, caused by...
industrialized societies. Human Microbiome Project Human milk microbiome Human virome Hygiene hypothesis Initial acquisition of microbiota Microbiome Microbiome...
Kooning EV (27 November 2018). "Origins and Evolution of the Global RNA Virome". mBio. 9 (6): e02329-18. doi:10.1128/mBio.02329-18. PMC 6282212. PMID 30482837...
bats, cannot be transmitted through bat guano. A 2011 study of bat guano viromes in the U.S. states of Texas and California recovered no viruses that are...
Krupovic, M; Dolja, VV; Koonin, EV (14 July 2020). "The LUCA and its complex virome" (PDF). Nat Rev Microbiol. 18 (11): 661–670. doi:10.1038/s41579-020-0408-x...
contrast to the virome, which more commonly refers to the collection of nucleic acids contained by viruses in a microbiome. Human virome Non-cellular life...
via transformation. Metagenomics-based studies also have revealed that viromes from a variety of environments harbor antibiotic-resistance genes, including...
Choi, Hoseong; Lee, Jeong Hun; Cho, Won Kyong; Moh, Sang Hyun (2022). "Viromes of 15 Pepper (Capsicum annuum L.) Cultivars". International Journal of...
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