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Tag SNP information


A tag SNP is a representative single nucleotide polymorphism (SNP) in a region of the genome with high linkage disequilibrium that represents a group of SNPs called a haplotype. It is possible to identify genetic variation and association to phenotypes without genotyping every SNP in a chromosomal region. This reduces the expense and time of mapping genome areas associated with disease, since it eliminates the need to study every individual SNP. Tag SNPs are useful in whole-genome SNP association studies in which hundreds of thousands of SNPs across the entire genome are genotyped.

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Tag SNP

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A tag SNP is a representative single nucleotide polymorphism (SNP) in a region of the genome with high linkage disequilibrium that represents a group...

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SNP genotyping

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SNP genotyping is the measurement of genetic variations of single nucleotide polymorphisms (SNPs) between members of a species. It is a form of genotyping...

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International HapMap Project

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region one locates a set of tag SNPs from the HapMap data; these are SNPs that are very well correlated with all the other SNPs in the region. Using these...

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Nicola Sturgeon

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as First Minister of Scotland and Leader of the Scottish National Party (SNP) from 2014 to 2023. She has served as a member of the Scottish Parliament...

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Haploview

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genetic data. Haploview can also perform association studies, choosing tagSNPs and estimating haplotype frequencies. Haploview is developed and maintained...

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Restriction site associated DNA markers

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tags have been isolated, they can be used to identify and genotype DNA sequence polymorphisms mainly in form of single nucleotide polymorphisms (SNPs)...

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Linkage disequilibrium

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Genetic hitchhiking Genetic linkage Co-adaptation Genealogical DNA test Tag SNP Association mapping Family based QTL mapping Slatkin, Montgomery (June...

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History of the Scottish National Party

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Scottish National Party (SNP) is a left social democratic political party which campaigns for Scottish independence. The SNP has controlled Scotland's...

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Functional element SNPs database

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sources such as HapMap, UCSC GoldenPath, dbSNP, OMIM, and TRANSFAC. Users can obtain information about tag SNPs and simulate LD blocks for each gene. FESD...

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Alison Thewliss

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Alison Emily Thewliss (born 13 September 1982) is a Scottish National Party (SNP) politician. She has been the Member of Parliament (MP) for Glasgow Central...

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Genotyping by sequencing

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identify SNPs from aligned tags and score all discovered SNPs for various coverage, depth and genotypic statistics. Once a large-scale, species-wide SNP production...

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Molecular Inversion Probe

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array are bound by the tags allows the determination of the SNP identities at the genomic loci represented by those tags. The SNPs targeted by MIP can then...

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Joe Hendry

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Scotland with Insane Championship Wrestling (ICW), where he was a one-time ICW Tag Team Champion, in England with New Generation Wrestling and Defiant Wrestling...

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RIPK5

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"Shotgun sequencing of the human transcriptome with ORF expressed sequence tags". Proc. Natl. Acad. Sci. U.S.A. 97 (7): 3491–6. Bibcode:2000PNAS...97.3491D...

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GST

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flying boat Vision GST, a Mercedes-Benz concept car Gene-specific tag (also referred to as SNP) General set theory General strain theory, in sociology General...

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Kompetitive allele specific PCR

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polymorphism (SNP) occurs when a single nucleotide in a DNA sequence differs between members of the same species or a paired chromosome. SNPs work as molecular...

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EMSY

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risk of breast and ovarian cancer: a case-control study using HapMap tagging SNPs". BMC Cancer. 5: 81. doi:10.1186/1471-2407-5-81. PMC 1185523. PMID 16029503...

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Anas Sarwar

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from 2011 to 2014. Sarwar lost his seat to the Scottish National Party (SNP) at the 2015 general election. He was elected at the 2016 Scottish Parliament...

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Human genome

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Therefore, the SNP Consortium protocol was designed to identify SNPs with no bias towards coding regions and the Consortium's 100,000 SNPs generally reflect...

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Molecular marker

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10 ug of DNA extracted from it to produce identifiable results. currently, SNP markers have turned out to be a potential tool in breeding programs in several...

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Restriction fragment length polymorphism

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mutations) has replaced the need for RFLP disease linkage analysis (see SNP genotyping). The analysis of VNTR alleles continues, but is now usually performed...

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Leszynski naming convention

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object names into the following elements: [prefix(es)][tag]BaseName[Suffix/Qualifier] The tags are lower case and the object name is camel case. Spaces...

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Lung cancer susceptibility

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Retrieved 19 April 2013. Broderick, P. (2009). "genomewide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1". Genetics...

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Genetic marker

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sequence surrounding a single base-pair change (single nucleotide polymorphism, SNP), or a long one, like minisatellites. For many years, gene mapping was limited...

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