List of alignment visualization software information
This page is a subsection of the list of sequence alignment software.
Multiple alignment visualization tools typically serve four purposes:
Aid general understanding of large-scale DNA or protein alignments
Visualize alignments for figures and publication
Manually edit and curate automatically generated alignments
Analysis in depth
The rest of this article is focused on only multiple global alignments of homologous proteins. The first two are a natural consequence of most representations of alignments and their annotation being human-unreadable and best portrayed in the familiar sequence row and alignment column format, of which examples are widespread in the literature. The third is necessary because algorithms for both multiple sequence alignment and structural alignment use heuristics which do not always perform perfectly. The fourth is a great example of how interactive graphical tools enable a worker involved in sequence analysis to conveniently execute a variety if different computational tools to explore an alignment's phylogenetic implications; or, to predict the structure and functional properties of a specific sequence, e.g., comparative modelling.
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This listof structural comparison and alignmentsoftware is a compilation ofsoftware tools and web portals used in pairwise or multiple structural comparison...
sequence alignment techniques in analyzing series of purchases over time. A more complete listof available software categorized by algorithm and alignment type...
access to remote data sources, and visualizing molecular dynamics trajectories. It can be used for scientific visualization and analysis, and chemistry and...
Sirius software have incorporated this language into their commands. Protein Data Bank (PDB) files can be downloaded for visualization from members of the...
further analysis or reporting. Inxight – provider of text analytics, search, and unstructured visualization technologies. (Inxight was bought by Business...
between analysis and visualization tools. Genomic browsers are software products that simplify the analysis and visualizationof large genomic sequence...
amino acid atoms is represented as a stick. This type ofvisualization is most used to visualize interactions between amino acids... The classic DNA duplexes...
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Slicer – a software package for scientific visualization and image analysis ClearVolume – a GPU ray-casting based, live 3D visualization library designed...
interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking...
entry of the n-dimensional point, vertices are connected with n-1 polyline segments. This data visualization is similar to time series visualization, except...
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is a free and open source software package for image analysis and scientific visualization. Slicer is used in a variety of medical applications, including...
panorama or high-resolution image. Commonly performed through the use of computer software, most approaches to image stitching require nearly exact overlaps...
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