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Amphimedon queenslandica information


Amphimedon queenslandica
Amphimedon queenslandica adult
Scientific classification Edit this classification
Domain: Eukaryota
Kingdom: Animalia
Phylum: Porifera
Class: Demospongiae
Order: Haplosclerida
Family: Niphatidae
Genus: Amphimedon
Species:
A. queenslandica
Binomial name
Amphimedon queenslandica
Hooper & Van Soest, 2006[1]
Amphimedon queenslandica stores embryos in its brood chamber.[2] The image is about 4 mm wide.

Amphimedon queenslandica (formerly known as Reniera sp.[2][3]) is a sponge native to the Great Barrier Reef. Its genome has been sequenced.[4] It has been the subject of various studies on the evolution of metazoan development.[2][5]

A. queenslandica was first discovered in 1998 on Heron Island Reef by Sally Leys when looking for sponges with larvae to study polarity,[6] and was formally described by John Hooper and Rob van Soest in 2006.[1] Like most sponges it has a biphasic life cycle, passing through a planktonic phase whilst a larva, but later becoming a benthic dweller.[6] It is hermaphroditic, and reproduces via spermcast spawning,[4] meaning it releases sperm into water but retains eggs, which are fertilised internally.[7] The embryos develop in brood chambers until they reach a certain size, then disperse as parenchymella larvae.[6][8] During this larval stage, they have a strong preference for darkness.[6][9][3] The sponge is difficult or impossible to maintain in captivity.[6]

  1. ^ a b Hooper, John N.A.; Rob W.M. Van Soest (2006-09-14). "A new species of Amphimedon (Porifera, Demospongiae, Haplosclerida, Niphatidae) from the Capricorn-Bunker Group of Islands, Great Barrier Reef, Australia: target species for the 'sponge genome project'" (PDF). Zootaxa. 1314. Magnolia Press: 31–39. doi:10.11646/zootaxa.1314.1.2. hdl:11245/1.265031. Retrieved 2010-04-07.
  2. ^ a b c Adamska, M.; Degnan, S.; Green, K.; Adamski, M.; Craigie, A.; Larroux, C.; Degnan, B.; Fraser, J. (2007). Fraser, James (ed.). "Wnt and TGF-beta expression in the sponge Amphimedon queenslandica and the origin of metazoan embryonic patterning". PLOS ONE. 2 (10): e1031. Bibcode:2007PLoSO...2.1031A. doi:10.1371/journal.pone.0001031. PMC 2000352. PMID 17925879.
  3. ^ a b Sally P. Leys; Bernard M. Degnan (1 December 2001). "Cytological basis of photoresponsive behavior in a sponge larva". The Biological Bulletin. 201 (3): 323–338. doi:10.2307/1543611. ISSN 0006-3185. JSTOR 1543611. PMID 11751245. Wikidata Q56188960.
  4. ^ a b Srivastava, M.; Simakov, O.; Chapman, J.; Fahey, B.; Gauthier, M. E. A.; Mitros, T.; Richards, G. S.; Conaco, C.; Dacre, M.; Hellsten, U.; Larroux, C.; Putnam, N. H.; Stanke, M.; Adamska, M.; Darling, A.; Degnan, S. M.; Oakley, T. H.; Plachetzki, D. C.; Zhai, Y.; Adamski, M.; Calcino, A.; Cummins, S. F.; Goodstein, D. M.; Harris, C.; Jackson, D. J.; Leys, S. P.; Shu, S.; Woodcroft, B. J.; Vervoort, M.; Kosik, K. S. (2010). "The Amphimedon queenslandica genome and the evolution of animal complexity". Nature. 466 (7307): 720–726. Bibcode:2010Natur.466..720S. doi:10.1038/nature09201. PMC 3130542. PMID 20686567.
  5. ^ Tompkins-Macdonald, G. .; Gallin, W. .; Sakarya, O. .; Degnan, B. .; Leys, S. .; Boland, L. . (2009). "Expression of a poriferan potassium channel: insights into the evolution of ion channels in metazoans". The Journal of Experimental Biology. 212 (Pt 6): 761–767. doi:10.1242/jeb.026971. PMC 6518305. PMID 19251990.
  6. ^ a b c d e Degnan, B. M.; Adamska, M.; Craigie, A.; Degnan, S. M.; Fahey, B.; Gauthier, M.; Hooper, J. N. A.; Larroux, C.; Leys, S. P.; Lovas, E.; Richards, G. S. (2008). "The Demosponge Amphimedon queenslandica: Reconstructing the Ancestral Metazoan Genome and Deciphering the Origin of Animal Multicellularity". Cold Spring Harbor Protocols. 2008 (13): pdb.emo108. doi:10.1101/pdb.emo108. PMID 21356734.
  7. ^ Bishop, J. D. D.; Pemberton, A. J. (2006). "The third way: spermcast mating in sessile marine invertebrates". Integrative and Comparative Biology. 46 (4): 398–406. doi:10.1093/icb/icj037. PMID 21672752.
  8. ^ Leys, Sally P.; Degnan, Bernard M. (2005-05-12). "Embryogenesis and metamorphosis in a haplosclerid demosponge: gastrulation and transdifferentiation of larval ciliated cells to choanocytes". Invertebrate Biology. 121 (3): 171–189. doi:10.1111/j.1744-7410.2002.tb00058.x.
  9. ^ Sally P Leys; Thomas W Cronin; Bernard M Degnan; Justin N Marshall (15 March 2002). "Spectral sensitivity in a sponge larva" (PDF). Journal of Comparative Physiology. 188 (3): 199–202. doi:10.1007/S00359-002-0293-Y. ISSN 0302-9824. PMID 11976887. Wikidata Q50500452.

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Amphimedon queenslandica

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Amphimedon queenslandica (formerly known as Reniera sp.) is a sponge native to the Great Barrier Reef. Its genome has been sequenced. It has been the subject...

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List of model organisms

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is also emerging as a model for plant biology and development. Amphimedon queenslandica, a demosponge from the phylum Porifera used as a model for evolutionary...

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TEX9

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Trichoplax sp. H2 Trichoplax Placozoa 948 RDD37208.1 451 30 44 Amphimedon queenslandica Amphimedon Porifera 951.8 XP_003384031.2 339 27 41 Spizellomyces punctatus...

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Nuclear receptor

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with sequenced genomes, two have been reported from the sponge Amphimedon queenslandica, two from the comb jelly Mnemiopsis leidyi four from the placozoan...

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Cryptochrome

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the CRY protein. Also the ring eyes of the demosponge larva of Amphimedon queenslandica express a blue-light-sensitive cryptochrome (Aq-Cry2), which might...

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List of examples of convergent evolution

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absence of opsins and nervous systems. The fully sequenced genome of Amphimedon queenslandica, a demosponge larvae, lacks one vital visual component: opsin-a...

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List of sequenced animal genomes

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but not partial genome sequences or organelle-only sequences. Amphimedon queenslandica, a sponge (2009) Stylissa carteri (2016) Ephydatia muelleri (2020)...

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C1orf112

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to human C1orf112 include Trichosporon asahii, a placozoa, and Amphimedon queenslandica, indicated that C1orf112 has been preserved over evolutionary time...

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C17orf98

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c17orf98 orthologs in organisms such as Macrostomum lignano and Amphimedon queenslandica exhibit nuclear expression. Nuclear localization signals are present...

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C8orf82

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Mite Metaseiulus occidentalis 847 XP_003744318 211 42% 60% Sponge Amphimedon queenslandica 936 XP_003384611 215 47% 62% Protozoa Tetrahymena thermophila 1724...

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NBPF26

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Paramormyrops kingsleyae Elephantfish NOTCH2L XP_023699719.1 2,420 14.4 22.2 Invertebrates Amphimedon queenslandica Sponge FBPP1L XP_019855855 698 8.1 14.4...

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MirGeneDB

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Freshwater-polyp (Hydra vulgaris)  (26 genes, 23 families) Porifera Amphimedon (Amphimedon queenslandica)  (8 genes, 7 families) Muellers freshwater sponge (Ephydatia...

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ARMH3

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(approximately 35% sequence identity) were identified in Parazoa (i.e., A. queenslandica) and in Fungi, specifically Ascomycetes (i.e., A. oryzae). The following...

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KIAA1958

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41% Branchiostoma floridae Lancelet XP_002611438 719 a 29% 48% Amphimedon queenslandica Sponge XP_003390994 388 a 25% 48% Acyrthosiphon pisum Pea aphid...

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MIF4GD

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Fruit fly XP_015028674 736 16.2 29.6 Temnothorax curvispinosus Ant XP_024872082 736 14.1 25.6 Amphimedon queenslandica Sponge XP_011404567 777 20.4 39.6...

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SLC66A3

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224 29 Asterias rubens Common starfish Forcipulatida 627 XP_033644897.1 213 28 Amphimedon queenslandica Sponge Haplosclerida 777 XP_019856231.1 221 26...

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PBDC1

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168aa 38% 74% Acromyrmex echinatior Ant EGI60293.1 197aa 32% 74% Amphimedon queenslandica Sponge XP_003383281.1 159aa 31% 74% Saccharomyces cerevisiae Yeast...

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CFAP299

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Drosophila melanogaster Fruit fly Insecta 794 NP_650260.1 233 31% 46% Amphimedon queenslandica Sponge Demospongiae 951.8 XP_003382446 235 64% 80% Batrachochytrium...

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Niphatidae

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described in 1980 by Rob van Soest. It contains the following genera: Amphimedon Duchassaing & Michelotti, 1864 Cribrochalina Schmidt, 1870 Dasychalina...

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C10orf67

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93 Salmo salar Atlantic Salmon 435 XP_013995887 455 21.6 6.18 Amphimedon queenslandica Reniera Invertebrate 951.8 XP_011402872 513 24.1 7.05 Branchiostoma...

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FGFR1OP2

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Nematode 937.5 EFO20048.2 266 51% Schistosoma mansoni Blood fluke 792.4 CCD58880.1 342 51% Amphimedon queenslandica Sponge 716.5 XP_003387498.1 221 48%...

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C3orf67

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XP_014778712.1 902 29.10% Saccoglossus kowalevskii Acorn worm 684 XP_006821003.1 596 23.30% Amphimedon queenslandica Sponge 951.8 XP_011402616.1 508 22.70%...

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CCDC11

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adhaerens Trichoplax XP_002111027.1 514 33% 60% Danio rerio Zebra fish NP_001038595.2 519 32% 58% Amphimedon queenslandica Sponge XP_003389146.1 513 31% 60%...

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Ccdc60

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in which a likely ortholog to Human CCDC60 can be found in is Amphimedon queenslandica, a sea sponge. Orthologs to Human CCDC60 are not found in any prokaryotes...

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C6orf136

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Trichoplax adhaerens Trichoplax Tricoplaciformes 747 XP_002109420.1 415 34% 57% Amphimedon queenslandica Porifera Porifera 777 XP_019852039.1 303 33% 7%...

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CCDC130

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56 13 Takifugu rubripes Pufferfish 400.1 XP_003972319 379 65 14 Amphimedon queenslandica Sponge 716.5 XP_003388671 299 46 15 Culex quinquefasciatus Mosquito...

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