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Plasmid copy number information


In cellular biology, the plasmid copy number is the number of copies of a given plasmid in a cell. To ensure survival and thus the continued propagation of the plasmid, they must regulate their copy number. If a plasmid has too high of a copy number, they may excessively burden their host by occupying too much cellular machinery and using too much energy. On the other hand, too low of a copy number may result in the plasmid not being present in all of their host's progeny. Plasmids may be either low, medium or high copy number plasmids; the regulation mechanisms between low and medium copy number plasmids are different. Low copy plasmids (5 or less copies per host) require either a partitioning system or a toxin-antitoxin pair such as CcdA/CcdB to ensure that each daughter receives the plasmid. For example, the F plasmid, which is the origin of BACs (bacterial artificial chromosomes) is a single copy plasmid with a partitioning system encoded in an operon right next to the plasmid origin. The partitioning system interacts with the septation apparatus to ensure that each daughter receives a copy of the plasmid. Many biotechnology applications utilize mutated plasmids that replicate to high copy number. For example, pBR322 is a medium copy number plasmid (~20 copies/cell) from which several high copy number cloning vectors (>100 copies/cell) have been derived by mutagenesis, such as the well known pUC series.[1] This delivers the convenience of high plasmid DNA yields but the additional burden of the high copy number restricts the plasmid size. Larger high copy plasmids (>30kb) are disfavoured and also prone to size reduction through deletional mutagenesis.

  1. ^ Boros, I; Pósfai, G; Venetianer, P (October 1984). "High-copy-number derivatives of the plasmid cloning vector pBR322". Gene. 30 (1–3): 257–60. doi:10.1016/0378-1119(84)90130-6. PMID 6096220.

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Plasmid copy number

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the plasmid copy number is the number of copies of a given plasmid in a cell. To ensure survival and thus the continued propagation of the plasmid, they...

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Plasmid

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called the plasmid copy number, and is determined by how the replication initiation is regulated and the size of the molecule. Larger plasmids tend to have...

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Ti plasmid

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of the plasmid, the partitioning of the plasmid into daughter cells during cell division as well as the maintenance of the plasmid at low copy numbers...

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Copy number variation

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Copy number variation (CNV) is a phenomenon in which sections of the genome are repeated and the number of repeats in the genome varies between individuals...

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PBR322

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replication of pMB1, and the rop gene, which encodes a restrictor of plasmid copy number. The plasmid has unique restriction sites for more than forty restriction...

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Plasmid preparation

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depending on the plasmid copy number, type and size, the bacterial strain, the growth conditions, and the kit. Minipreparation of plasmid DNA is a rapid...

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Plasmid partition system

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controls the number of copies of the plasmid in a cell. The higher the copy number, the more likely the two daughter cells will contain the plasmid. Generally...

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Iteron

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of plasmid copy number in bacterial cells. It is one among the three negative regulatory elements found in plasmids which control its copy number. The...

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Plant transformation vector

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coli; however, the plasmid copy-number is usually lower when the plasmid is resident within Agrobacterium tumefaciens. Plasmids can also be replicated...

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Cloning vector

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plasmids, and a large number of different cloning plasmid vectors are available. Many plasmids have high copy numbers, for example, pUC19 has a copy number...

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RK2 plasmid

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respectively. Minimal plasmids such as PFF1 are useful for studying the basic mechanisms of plasmid replication and copy number regulation, as there are...

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RNAI

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major factor in the control of plasmid replication. This rate of degradation is aided by the pcnB (plasmid copy number B) gene product, which polyadenylates...

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Rop protein

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small dimeric protein responsible for keeping the copy number of ColE1 family and related bacterial plasmids low in E. coli by increasing the speed of pairing...

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R1 plasmid

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medium copy number plasmids.[page needed] R1 must rely on a "Type II" segregation system. This plasmid system ensures that at least one copy is contained...

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Antisense RNA

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plasmids, bacteriophage and bacteria. For example, in plasmid ColE1, the asRNA termed RNA I plays an important role in determining the plasmid copy number...

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Transformation efficiency

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exogenous DNA, such as plasmids, during a process called transformation. The efficiency of transformation is typically measured as the number of transformants...

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Johan Paulsson

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Nordström; and M.Ehrenberg (1998). "Requirements for rapid plasmid copy number adjustments". Plasmid. 39 (3): 215–234. doi:10.1006/plas.1998.1338. PMID 9571138...

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Extrachromosomal DNA

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the plasmid to replicate independently of the bacterial chromosome. The total number of a particular plasmid within a cell is referred to as the copy number...

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PUC19

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of replication, is derived from the plasmid pMB1. pUC19 is small but has a high copy number. The high copy number is a result of the lack of the rop gene...

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Multiple cloning site

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engineered plasmids. Restriction sites within an MCS are typically unique, occurring only once within a given plasmid. The purpose of an MCS in a plasmid is to...

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Molecular cloning

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inserted into a plasmid and that these foreign sequences would be carried into bacteria and digested as part of the plasmid. That is, these plasmids could serve...

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ColE1

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growth rates. ColE1 has a copy number of 25-30 according to its original publication. Hershfield, V; et al. (1974). "Plasmid ColE1 as a Molecular Vehicle...

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Fosmid

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Fosmids are similar to cosmids but are based on the bacterial F-plasmid. The cloning vector is limited, as a host (usually E. coli) can only contain one...

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Ames strain

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virulence is the copy number of plasmids per cell. The number of plasmids among isolates varies, with as many as 243 copies of pXO1 and 32 copies of pXO2 per...

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