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Phycoerythrin information


Phycoerythrin, alpha/beta chain
Identifiers
SymbolPhycoerythr_ab
PfamPF02972
InterProIPR004228
SCOP21qgw / SCOPe / SUPFAM
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary

Phycoerythrin (PE) is a red protein-pigment complex from the light-harvesting phycobiliprotein family, present in cyanobacteria,[1] red algae[2] and cryptophytes,[3] accessory to the main chlorophyll pigments responsible for photosynthesis.The red pigment is due to the prosthetic group, phycoerythrobilin, which gives phycoerythrin its red color.[4]

Like all phycobiliproteins, it is composed of a protein part covalently binding chromophores called phycobilins. In the phycoerythrin family, the most known phycobilins are: phycoerythrobilin, the typical phycoerythrin acceptor chromophore. Phycoerythrobilin is a linear tetrapyrrole molecule found in cyanobacteria, red algae, and cryptomonads. Together with other bilins such as phycocyanobilin it serves as a light-harvesting pigment in the photosynthetic light-harvesting structures of cyanobacteria called phycobilisomes.[5] Phycoerythrins are composed of (αβ) monomers, usually organised in a disk-shaped trimer (αβ)3 or hexamer (αβ)6 (second one is the functional unit of the antenna rods). These typical complexes also contain a third type of subunit, the γ chain.[2]

  1. ^ Basheva D, Moten D, Stoyanov P, Belkinova D, Mladenov R, Teneva I (November 2018). "Content of phycoerythrin, phycocyanin, alophycocyanin and phycoerythrocyanin in some cyanobacterial strains: Applications". Engineering in Life Sciences. 18 (11): 861–866. Bibcode:2018EngLS..18..861B. doi:10.1002/elsc.201800035. PMC 6999198. PMID 32624879.
  2. ^ a b Cite error: The named reference Ficner93 was invoked but never defined (see the help page).
  3. ^ Cite error: The named reference WeijDeWit06 was invoked but never defined (see the help page).
  4. ^ Hine, Robert; Martin, Elizabeth, eds. (2015). "Phycoerythrin". A Dictionary of Biology. Oxford University Press. doi:10.1093/acref/9780198714378.001.0001. ISBN 978-0-19-871437-8. Retrieved 2021-11-27 – via login.aurarialibrary.idm.oclc.org.
  5. ^ Dammeyer T, Frankenberg-Dinkel N (September 2006). "Insights into phycoerythrobilin biosynthesis point toward metabolic channeling". The Journal of Biological Chemistry. 281 (37): 27081–27089. doi:10.1074/jbc.M605154200. PMID 16857683.

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Phycoerythrin

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Phycoerythrin (PE) is a red protein-pigment complex from the light-harvesting phycobiliprotein family, present in cyanobacteria, red algae and cryptophytes...

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Biological pigment

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pyocyanin, actinorhodin, and zeaxanthin. Cyanobacteria produce phycocyanin, phycoerythrin, scytonemin, chlorophyll a, chlorophyll d, and chlorophyll f. Purple...

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Phycobiliprotein

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Piras, C.; Vernede, X.; et al. (2000-05-09). "Crystal structure of R-phycoerythrin at 2.2 angstroms". RCSB Protein Data Bank (PDB). doi:10.2210/pdb1eyx/pdb...

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Red algae

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While this was formerly attributed to the presence of pigments (such as phycoerythrin) that would permit red algae to inhabit greater depths than other macroalgae...

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Porphyridium cruentum

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provide the source for bio-fuel and pharmaceutical. This algae contains phycoerythrin that can be extracted by lyse and chromatography. The genus Porphyridium...

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Cyanobacteria

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cyanobacteria. The variations on this theme are due mainly to carotenoids and phycoerythrins that give the cells their red-brownish coloration. In some cyanobacteria...

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Phycobilisome

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oriented rods made of stacked disks of phycocyanin and (if present) phycoerythrin(s) or phycoerythrocyanin. The spectral property of phycobiliproteins...

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Cryptomonas

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in the phycobiliprotein phycoerythrin, the terminal acceptor of energy during the process of photosynthesis. The phycoerythrin was translocated into the...

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Flow cytometry

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the protein, followed by a streptavidin-R-phycoerythrin treatment. The fluorescent intensity of R-phycoerythrin on the beads is quantified on a flow cytometer...

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Accessory pigment

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contains divinyl-chlorophyll a and b. Synechococcus, colored red with phycoerythrin, is adapted to coastal bodies, while phycocyanin allows Cyanobacteria...

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Montastraea

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during daytime; it has recently been suggested that this hue is due to phycoerythrin, a cyanobacterial protein. It appears that, in addition to symbiotic...

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Cryptomonad

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are present but only in the thylakoid lumen and are present only as phycoerythrin or phycocyanin. In the case of Rhodomonas, the crystal structure has...

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Fluorophore

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QY 0.15; pH sensitive Lucifer yellow 425 528 NBD 466 539 294 NBD-X R-Phycoerythrin (PE) 480;565 578 240 k PE-Cy5 conjugates 480;565;650 670 aka Cychrome...

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Synechococcus

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subdivided into subgroups based on the presence of the accessory pigment phycoerythrin. The marine forms of Synechococcus are coccoid cells between 0.6 and...

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Immunoassay

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label used in these assays is a DNA probe. Fluorogenic reporters like phycoerythrin are used in a number of modern immunoassays. Protein microarrays are...

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Photosynthesis

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present, such as phycocyanin, carotenes, and xanthophylls in green algae, phycoerythrin in red algae (rhodophytes) and fucoxanthin in brown algae and diatoms...

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Bangia

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range from green to red to purple to grey; however, the red pigment, phycoerythrin, is usually dominant. Bangia aeruginosa Sprengel Bangia amethystina...

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PE

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equivalent, used to measure doses of fosphenytoin Phosphatidyl ethanolamine Phycoerythrin, a water-soluble protein used as a fluorescent marker in microscopy...

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Photosynthetic efficiency

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biomass-stored chemical energy at the rate of ~450 TW. Some pigments such as B-phycoerythrin that are mostly found in red algae and cyanobacteria has much higher...

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Geminigeraceae

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and Teleaulax. They are characterised by chloroplasts containing Cr-phycoerythrin 545, and an inner periplast component (IPC) comprising "a sheet or a...

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Texas Red

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linked with another fluorophore. A tandem conjugate of Texas Red with R-phycoerythrin (PE-Texas Red) is often used. Fluorophores, like Texas Red, are commonly...

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Phycourobilin

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phycobiliprotein phycoerythrin, the distal component of the light-harvesting system of cyanobacteria and red algae (phycobilisome). When bound to phycoerythrin, phycourobilin...

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Biliprotein

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bilin that belongs to it (e.g. phycoerythrobilin is the chromophore of phycoerythrin and phycocyanobilin is the chromophore of phycocyanin). The bilin chromophores...

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Allophycocyanin

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the light-harvesting phycobiliprotein family, along with phycocyanin, phycoerythrin and phycoerythrocyanin. It is an accessory pigment to chlorophyll. All...

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Lanthanide

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more traditional fluorophores (e.g., fluorescein, allophycocyanin, phycoerythrin, and rhodamine). The biological fluids or serum commonly used in these...

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Blood doping

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antigens are labeled with secondary antibodies, which are conjugated with phycoerythrin to label IgG or IgM-coated RBCs and enhance the detection by flow cytometry...

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Chloroplast

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chlorophyll a and phycobilins for photosynthetic pigments; the phycobilin phycoerythrin is responsible for giving many red algae their distinctive red color...

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Phycocyanin

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light-harvesting phycobiliprotein family, along with allophycocyanin and phycoerythrin. It is an accessory pigment to chlorophyll. All phycobiliproteins are...

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