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Fluorophore information


A fluorophore-labeled human cell.

A fluorophore (or fluorochrome, similarly to a chromophore) is a fluorescent chemical compound that can re-emit light upon light excitation. Fluorophores typically contain several combined aromatic groups, or planar or cyclic molecules with several π bonds.[1]

Fluorophores are sometimes used alone, as a tracer in fluids, as a dye for staining of certain structures, as a substrate of enzymes, or as a probe or indicator (when its fluorescence is affected by environmental aspects such as polarity or ions). More generally they are covalently bonded to macromolecules, serving as a markers (or dyes, or tags, or reporters) for affine or bioactive reagents (antibodies, peptides, nucleic acids). Fluorophores are notably used to stain tissues, cells, or materials in a variety of analytical methods, such as fluorescent imaging and spectroscopy.

Fluorescein, via its amine-reactive isothiocyanate derivative fluorescein isothiocyanate (FITC), has been one of the most popular fluorophores. From antibody labeling, the applications have spread to nucleic acids thanks to carboxyfluorescein. Other historically common fluorophores are derivatives of rhodamine (TRITC), coumarin, and cyanine.[2] Newer generations of fluorophores, many of which are proprietary, often perform better, being more photostable, brighter, or less pH-sensitive than traditional dyes with comparable excitation and emission.[3][4]

  1. ^ Juan Carlos Stockert, Alfonso Blázquez-Castro (2017). "Chapter 3 Dyes and Fluorochromes". Fluorescence Microscopy in Life Sciences. Bentham Science Publishers. pp. 61–95. ISBN 978-1-68108-519-7. Retrieved 24 December 2017.
  2. ^ Rietdorf J (2005). Microscopic Techniques. Advances in Biochemical Engineering / Biotechnology. Berlin: Springer. pp. 246–9. ISBN 3-540-23698-8. Retrieved 2008-12-13.
  3. ^ Cite error: The named reference Pawley was invoked but never defined (see the help page).
  4. ^ Lakowicz, JR (2006). Principles of fluorescence spectroscopy (3rd ed.). Springer. p. 954. ISBN 978-0-387-31278-1.

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Fluorophore

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A fluorophore (or fluorochrome, similarly to a chromophore) is a fluorescent chemical compound that can re-emit light upon light excitation. Fluorophores...

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Immunofluorescence

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conjugating the antibody to a fluorophore, the position of the target biomolecule is visualized by exciting the fluorophore and measuring the emission of...

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Glow stick

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when the second fluorophore would degrade in solution or be attacked by the chemicals. The emission spectrum of the first fluorophore and the absorption...

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TaqMan

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consist of a fluorophore covalently attached to the 5’-end of the oligonucleotide probe and a quencher at the 3’-end. Several different fluorophores (e.g....

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Photobleaching

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(sometimes termed fading) is the photochemical alteration of a dye or a fluorophore molecule such that it is permanently unable to fluoresce. This is caused...

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Fluorescence spectroscopy

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from the emitted light are measured from either single fluorophores, or pairs of fluorophores. Devices that measure fluorescence are called fluorometers...

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Brainbow

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exposed to a photon with its particular excitation wavelength, each fluorophore emits a signal that is collected into a red, green, or blue channel,...

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Fluorescence microscope

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light of a specific wavelength (or wavelengths) which is absorbed by the fluorophores, causing them to emit light of longer wavelengths (i.e., of a different...

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Fluorescence

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The latter may be referred to as biofluorescence, indicating that the fluorophore is part of or is extracted from a living organism (rather than an inorganic...

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Spinach aptamer

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sequence after an RNA sequence of interest is readily available. GFP’s fluorophore is made up of three cyclized amino acids within the beta-barrel structure:...

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Fluor

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multinational engineering and construction firm. Fluorite, a class of minerals Fluorophore, a fluorescent chemical compound Flour (disambiguation) Fleur (disambiguation)...

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Bimolecular fluorescence complementation

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will bring the fluorophores into close spatial proximity. If the fluorophores are oriented in a manner that exposes the fluorophores to one another,...

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Intersystem crossing

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or fluorophores, in order to image biological systems. Since fluorescence and phosphorescence are competitive methods of relaxation, a fluorophore that...

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Fluorescence anisotropy

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fluorescence polarization is the phenomenon where the light emitted by a fluorophore has unequal intensities along different axes of polarization. Early pioneers...

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Photoactivated localization microscopy

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of dyes are used for PALM, STORM and related techniques, both organic fluorophores and fluorescent proteins. Some are compatible with live cell imaging...

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Retinal ganglion cell

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through a fluorescence microscope at 50x magnification. The optic nerve was injected with a fluorophore, causing retinal ganglion cells to fluoresce....

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Shark

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blue light, such as the swell shark and the chain catshark, where the fluorophore derives from a metabolite of kynurenic acid. Sharks have keen olfactory...

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Total internal reflection fluorescence microscope

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have been studied with conventional fluorescence microscopes. However, fluorophores that are bound to the specimen surface and those in the surrounding medium...

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Fluorescent tag

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uses a reactive derivative of a fluorescent molecule known as a fluorophore. The fluorophore selectively binds to a specific region or functional group on...

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Molecular imaging

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cancers. An NIR fluorophore has been conjugated to epidermal growth factor (EGF) for imaging of tumor progression. An NIR fluorophore was compared to...

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Microscopy

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combination of antibodies coupled to a fluorophore as in immunostaining. Examples of commonly used fluorophores are fluorescein or rhodamine. The antibodies...

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Optical brightener

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reflected by the material, with the blue and purple optical emission of the fluorophore. The most common classes of compounds with this property are the stilbenes...

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