Global Information Lookup Global Information

Disordered Structure Refinement information


Graphical user interface of DSR in ShelXle.

The Disordered Structure Refinement[1][2] program (DSR), written by Daniel Kratzert, is designed to simplify the modeling of molecular disorder in crystal structures using SHELXL[3][4][5] by George M. Sheldrick. It has a database of approximately 120 standard solvent molecules and molecular moieties. These can be inserted into the crystal structure with little effort, while at the same time chemically meaningful binding and angular restraints[6] are set. DSR was developed because the previous description of disorder in crystal structures with SHELXL was very lengthy and error-prone. Instead of editing large text files manually and defining restraints manually, this process is automated with DSR.

  1. ^ Kratzert, Daniel; Krossing, Ingo (3 May 2018). "Recent improvements in DSR". Journal of Applied Crystallography. 51 (3): 928–934. doi:10.1107/S1600576718004508. ISSN 1600-5767. Retrieved 17 August 2018.
  2. ^ Daniel Kratzert; Julian J. Holstein; Ingo Krossing (2015-06-01), "DSR: enhanced modelling and refinement of disordered structures with SHELXL", Journal of Applied Crystallography (in German), vol. 48, no. 3, pp. 933–938, doi:10.1107/s1600576715005580, ISSN 1600-5767, PMC 4453980, PMID 26089767, retrieved 2017-02-07
  3. ^ "The SHELX homepage" (in German). Retrieved 2017-02-07.
  4. ^ George M. Sheldrick (2008-01-01), "A short history of SHELX", Acta Crystallographica Section A: Foundations of Crystallography (in German), vol. 64, no. 1, pp. 112–122, Bibcode:2008AcCrA..64..112S, doi:10.1107/s0108767307043930, ISSN 0108-7673, PMID 18156677
  5. ^ George M. Sheldrick (2015-01-01), "Crystal structure refinement with SHELXL", Acta Crystallographica Section C: Structural Chemistry (in German), vol. 71, no. 1, pp. 3–8, doi:10.1107/s2053229614024218, ISSN 2053-2296, PMC 4294323, PMID 25567568
  6. ^ Gerard J. Kleywegt (2007-01-01), "Crystallographic refinement of ligand complexes", Acta Crystallographica Section D: Biological Crystallography (in German), vol. 63, no. 1, pp. 94–100, doi:10.1107/s0907444906022657, ISSN 0907-4449, PMC 2483469, PMID 17164531

and 25 Related for: Disordered Structure Refinement information

Request time (Page generated in 0.9178 seconds.)

Disordered Structure Refinement

Last Update:

The Disordered Structure Refinement program (DSR), written by Daniel Kratzert, is designed to simplify the modeling of molecular disorder in crystal structures...

Word Count : 522

Intrinsically disordered proteins

Last Update:

biology, an intrinsically disordered protein (IDP) is a protein that lacks a fixed or ordered three-dimensional structure, typically in the absence of...

Word Count : 6004

Rietveld refinement

Last Update:

Rietveld refinement is a technique described by Hugo Rietveld for use in the characterisation of crystalline materials. The neutron and X-ray diffraction...

Word Count : 4974

Order and disorder

Last Update:

order or short range order. If a disordered state is not in thermodynamic equilibrium, one speaks of quenched disorder. For instance, a glass is obtained...

Word Count : 957

Genetic disorder

Last Update:

PMID 15758612. S2CID 9382420. Šimčíková D, Heneberg P (December 2019). "Refinement of evolutionary medicine predictions based on clinical evidence for the...

Word Count : 3578

Phases of ice

Last Update:

crystalline structure, proton ordering, and density. There are also two metastable phases of ice under pressure, both fully hydrogen-disordered; these are...

Word Count : 15360

Protein structure prediction

Last Update:

have fixed three-dimensional structure, but do not form any regular structures. They should not be confused with disordered or unfolded segments of proteins...

Word Count : 8971

CASP

Last Update:

(starting CASP7) model refinement (starting CASP7) high-accuracy template-based prediction (starting CASP7) Tertiary structure prediction category was...

Word Count : 1783

Grain boundary strengthening

Last Update:

and move into the adjacent grain. The grain boundary is also much more disordered than inside the grain, which also prevents the dislocations from moving...

Word Count : 4204

Fetal alcohol spectrum disorder

Last Update:

believed to be caused mainly during the 10th to 20th week of gestation. Refinements in diagnostic criteria since 1975 have yielded three distinctive and...

Word Count : 15630

De novo protein structure prediction

Last Update:

conformer clustering. High-resolution refinement is sometimes used as a final step to fine-tune native-like structures. There are two major classes of scoring...

Word Count : 2842

Nuclear magnetic resonance crystallography

Last Update:

structural information can be obtained from high-resolution spectra of disordered solids. E.g. polymorphism is an area of interest for NMR crystallography...

Word Count : 1471

Difference density map

Last Update:

Tom; Murshudov, Garib N. (1 October 2021). "Cryo-EM single-particle structure refinement and map calculation using Servalcat". Acta Crystallographica Section...

Word Count : 576

Amylose

Last Update:

molecule. Fiber X-ray diffraction analysis coupled with computer-based structure refinement has found A-, B-, and C- polymorphs of amylose. Each form corresponds...

Word Count : 1767

ShelXle

Last Update:

The program ShelXle is a graphical user interface for the structure refinement program SHELXL. ShelXle combines an editor with syntax highlighting for...

Word Count : 518

Radial distribution function

Last Update:

energy function using the Ornstein-Zernike equation or structure-optimized potential refinement. Consider a system of N {\displaystyle N} particles in...

Word Count : 4544

AlphaFold

Last Update:

single integrated structure. Local physics, in the form of energy refinement based on the AMBER model, is applied only as a final refinement step once the...

Word Count : 4958

Cognitive behavioral therapy

Last Update:

Coping cards Demonstration Practice Skill refinement Relapse prevention Skill generalization Skill refinement Cognitive emotional behavioral therapy (CEBT)...

Word Count : 18209

List of Sustainable Development Goal targets and indicators

Last Update:

held in March 2017. The official indicator list below includes all the refinements made as of March 2020[update]. The lists of targets and indicators for...

Word Count : 1556

Transthyretin

Last Update:

1021/bi011194d. PMID 11560492. Šimčíková D, Heneberg P (December 2019). "Refinement of evolutionary medicine predictions based on clinical evidence for the...

Word Count : 2382

Superalloy

Last Update:

alloys, islands of an ordered intermetallic phase sit in a matrix of disordered phase, all with the same crystal lattice. This approximates the dislocation-pinning...

Word Count : 10193

Oil refinery

Last Update:

carbon atoms, and a small number of oxygen atoms. The differences in the structure of these molecules account for their varying physical and chemical properties...

Word Count : 10449

Joel Sussman

Last Update:

pioneer of macromolecular refinement, developing CORELS and applying it to yeast tRNAphe. He subsequently determined the structures of 'bulge'-containing...

Word Count : 919

IntFOLD

Last Update:

ModFOLD for 3D model quality estimation, ReFOLD for refinement of 3D models, DisoCLUST for disorder prediction, DomFOLD for structural domain prediction...

Word Count : 1382

Nuclear magnetic resonance spectroscopy of proteins

Last Update:

disordered structures. Nowadays, it is an accepted concept that proteins can exhibit a more flexible behaviour known as disorder or lack of structure;...

Word Count : 5327

PDF Search Engine © AllGlobal.net