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DM domain information


DM domain
Drosophila melanogaster doublesex (dsx), nmr, 18 structures
Identifiers
SymbolDM
PfamPF00751
InterProIPR001275
SMARTSM00718
SCOP21rvv / SCOPe / SUPFAM
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary

In molecular biology the DM domain is a protein domain first discovered in the doublesex proteins of Drosophila melanogaster and is also seen in C. elegans and mammalian proteins.[1] In D. melanogaster the doublesex gene controls somatic sexual differentiation by producing alternatively spliced mRNAs encoding related sex-specific polypeptides.[2] These proteins are believed to function as transcription factors on downstream sex-determination genes, especially on neuroblast differentiation and yolk protein genes transcription.[3][4]

The DM domain binds DNA as a dimer, allowing the recognition of pseudopalindromic sequences .[2][5][6] The NMR analysis of the DSX DM domain [6] revealed a novel zinc module containing 'intertwined' CCHC and HCCC zinc-binding sites. The recognition of the DNA requires the carboxy-terminal basic tail which contacts the minor groove of the target sequence.

  1. ^ Raymond CS, Shamu CE, Shen MM, Seifert KJ, Hirsch B, Hodgkin J, Zarkower D (February 1998). "Evidence for evolutionary conservation of sex-determining genes". Nature. 391 (6668): 691–5. Bibcode:1998Natur.391..691R. doi:10.1038/35618. PMID 9490411. S2CID 11414843.
  2. ^ a b Erdman SE, Chen HJ, Burtis KC (December 1996). "Functional and genetic characterization of the oligomerization and DNA binding properties of the Drosophila doublesex proteins". Genetics. 144 (4): 1639–52. doi:10.1093/genetics/144.4.1639. PMC 1207715. PMID 8978051.
  3. ^ Burtis KC, Coschigano KT, Baker BS, Wensink PC (September 1991). "The doublesex proteins of Drosophila melanogaster bind directly to a sex-specific yolk protein gene enhancer". EMBO J. 10 (9): 2577–82. doi:10.1002/j.1460-2075.1991.tb07798.x. PMC 452955. PMID 1907913.
  4. ^ Shen MM, Hodgkin J (September 1988). "mab-3, a gene required for sex-specific yolk protein expression and a male-specific lineage in C. elegans". Cell. 54 (7): 1019–31. doi:10.1016/0092-8674(88)90117-1. PMID 3046751. S2CID 1386352.
  5. ^ Yi W, Zarkower D (February 1999). "Similarity of DNA binding and transcriptional regulation by Caenorhabditis elegans MAB-3 and Drosophila melanogaster DSX suggests conservation of sex determining mechanisms". Development. 126 (5): 873–81. doi:10.1242/dev.126.5.873. PMID 9927589.
  6. ^ a b Zhu L, Wilken J, Phillips NB, Narendra U, Chan G, Stratton SM, Kent SB, Weiss MA (July 2000). "Sexual dimorphism in diverse metazoans is regulated by a novel class of intertwined zinc fingers". Genes Dev. 14 (14): 1750–64. doi:10.1101/gad.14.14.1750. PMC 316782. PMID 10898790.

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DM domain

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In molecular biology the DM domain is a protein domain first discovered in the doublesex proteins of Drosophila melanogaster and is also seen in C. elegans...

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DM

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Look up DM or dm in Wiktionary, the free dictionary. DM, Dm, dm, or D.M. may stand for: DM Yadav Doctor of Management, an academic management degree Doctor...

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SDTM

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Examples include—ORRES, --STRESC, and—STRESN. Many of the values in the DM domain are also classified as Result Qualifiers. Synonym Qualifiers specify an...

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Domain name

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In the Internet, a domain name is a string that identifies a realm of administrative autonomy, authority or control. Domain names are often used to identify...

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DMRT1

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family, having in common a zinc finger-like DNA-binding motif (DM domain). The DM domain is an ancient, conserved component of the vertebrate sex-determining...

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Internationalized domain name

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An internationalized domain name (IDN) is an Internet domain name that contains at least one label displayed in software applications, in whole or in...

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Artificial intelligence in industry

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processes can be classified into generic and domain-specific ones. Generic standard processes (e.g., CRISP-DM, ASUM-DM, KDD, SEMMA, or Team Data Science Process)...

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Japanese rice fish

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Shuichi; Shimizu, Nobuyoshi; Hori, Hiroshi (May 2002). "DMY is a Y-specific DM-domain gene required for male development in the medaka fish". Nature. 417 (6888):...

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Ballerburg

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distributed free of charge as public domain software. It was also donationware as the author asked for donations of 20 DM, offering as incentive the source...

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YceI protein domain

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being characterized by a lipocalin fold. Stancik LM, Stancik DM, Schmidt B, Barnhart DM, Yoncheva YN, Slonczewski JL (August 2002). "pH-dependent expression...

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Topologically associating domain

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Franke M, Ibrahim DM, Andrey G, Schwarzer W, Heinrich V, Schöpflin R, et al. (October 2016). "Formation of new chromatin domains determines pathogenicity...

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BZIP domain

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The Basic Leucine Zipper Domain (bZIP domain) is found in many DNA binding eukaryotic proteins. One part of the domain contains a region that mediates...

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Protocol Independent Multicast

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PIM Dense Mode (PIM-DM) uses dense multicast routing. It implicitly builds shortest-path trees by flooding multicast traffic domain wide, and then pruning...

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Chaperone DnaJ

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1007/s00018-006-6192-6. PMC 11136209. PMID 16952052. S2CID 21325339. Caplan AJ, Cyr DM, Douglas MG (June 1993). "Eukaryotic homologues of Escherichia coli dnaJ:...

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GCD domain

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every pair of elements x, y of a GCD domain R, a GCD d of x and y and an LCM m of x and y can be chosen such that dm = xy, or stated differently, if x and...

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USS Tracy

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USS Tracy (DD-214/DM-19) was a Clemson-class destroyer in the United States Navy during World War II. She was the only ship named for Secretary of the...

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ACT domain

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and Koonin using iterative sequence searches. Chipman DM, Shaanan B (December 2001). "The ACT domain family". Current Opinion in Structural Biology. 11 (6):...

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USS Lindsey

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USS Lindsey (DD-771/DM-32/MMD-32) was a Robert H. Smith-class destroyer minelayer in the United States Navy during World War II. She was named for Eugene...

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