In computational phylogenetics, tree alignment is a computational problem concerned with producing multiple sequence alignments, or alignments of three or more sequences of DNA, RNA, or protein. Sequences are arranged into a phylogenetic tree, modeling the evolutionary relationships between species or taxa. The edit distances between sequences are calculated for each of the tree's internal vertices, such that the sum of all edit distances within the tree is minimized. Tree alignment can be accomplished using one of several algorithms with various trade-offs between manageable tree size and computational effort.
computational phylogenetics, treealignment is a computational problem concerned with producing multiple sequence alignments, or alignments of three or more sequences...
phylogenetics, generalized treealignment is the problem of producing a multiple sequence alignment and a phylogenetic tree on a set of sequences simultaneously...
Multiple sequence alignment (MSA) is the process or the result of sequence alignment of three or more biological sequences, generally protein, DNA, or...
biology Evolutionary taxonomy Generalized treealignment List of phylogenetics software List of phylogenetic tree visualization software PANDIT, a biological...
In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence...
the fast Fourier transform and starts the alignment. Based on the new alignment, it reconstructs the guide tree and align again. To perform phylogenetic...
create new alignments from existing alignments in a process known as phylogenetic tree reconstruction. ClustalV also added the option to create trees using...
sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment and multiple sequence alignment. See structural...
history of genes through the visualization of phylogenetic trees and multiple sequence alignments. Moreover, phylomeDB provides genome-wide orthology and...
performed by applying a maximum likelihood test to a given tree topology and sequence alignment. This produces two log-likelihood values, one with the clock...
show parenthood; examples include TreeMaps, fractal maps, and Euler diagrams: Layered "icicle" diagrams that use alignment/adjacency. Lists or diagrams that...
Sequence analysis software List of sequence alignment software List of alignment visualization software Alignment-free sequence analysis De novo sequence...
Squamata) based on the analysis of 48 loci under tree-alignment and similarity-alignment". Cladistics. 32 (6): 624–671. doi:10.1111/cla.12150. hdl:10261/155759...
This page is a subsection of the list of sequence alignment software. Multiple alignment visualization tools typically serve four purposes: Aid general...
Squamata) based on the analysis of 48 loci under tree-alignment and similarity-alignment". Cladistics 32 (6): 624–671. (Loxopholis southi, new combination...
analysis: Phylogenetics studies rely on sequence alignment visualization to construct phylogenetic trees and analyze genetic relationships between species...
Gale-Church alignment algorithm. Through this and other mathematical models efficient search and retrieval of the highest scoring sentence alignment is possible...
the coastal redwoods that tower over the route. The road is a former alignment of U.S. Route 101, and continues to be maintained as a state highway as...
Global Information