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Photoaffinity labeling information


Photoaffinity labeling is a chemoproteomics technique used to attach "labels" to the active site of a large molecule, especially a protein. The "label" attaches to the molecule loosely and reversibly, and has an inactive site which can be converted using photolysis into a highly reactive form, which causes the label to bind more permanently to the large molecule via a covalent bond.[1][2] The technique was first described in the 1970s.[3] Molecules that have been used as labels in this process are often analogs of complex molecules, in which certain functional groups are replaced with a photoreactive group, such as an azide, a diazirine or a benzophenone.[4][5][6]

  1. ^ Photoaffinity labeling
  2. ^ Photoaffinity labeling, Gold Book
  3. ^ Ruoho, A. E.; Kiefer, H.; Roeder, P. E.; Singer, S. J. (1973). "The mechanism of photoaffinity labeling". Proceedings of the National Academy of Sciences of the United States of America. 70 (9): 2567–2571. Bibcode:1973PNAS...70.2567R. doi:10.1073/pnas.70.9.2567. PMC 427057. PMID 4517671.
  4. ^ Bush, J. T.; Walport, L. J.; McGouran, J. F.; Leung, I. K. H.; Berridge, G. (2013). "The Ugi four-component reaction enables expedient synthesis and comparison of photoaffinity probes". Chemical Science. 4 (12): 4115–4120. doi:10.1039/C3SC51708J.
  5. ^ Panov, M. S.; Voskresenska, V. D.; Ryazantsev, M. N.; Tarnovsky, A. N.; Wilson, R. M. (2013). "5-Azido-2-aminopyridine, a New Nitrene/Nitrenium Ion Photoaffinity Labeling Agent That Exhibits Reversible Intersystem Crossing between Singlet and Triplet Nitrenes". Journal of the American Chemical Society. 135 (51): 19167–19179. doi:10.1021/ja405637b. PMID 24219134.
  6. ^ Akiyama, S.; Cornwell, M. M.; Kuwano, M.; Pastan, I.; Gottesman, M. M. (1988). "Most drugs that reverse multidrug resistance also inhibit photoaffinity labeling of P-glycoprotein by a vinblastine analog". Molecular Pharmacology. 33 (2): 144–147. PMID 2893251.

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Photoaffinity labeling

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Photoaffinity labeling is a chemoproteomics technique used to attach "labels" to the active site of a large molecule, especially a protein. The "label"...

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Diazirine

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photo-reactive, crosslinking reagents. They are often used in photoaffinity labeling studies to observe a variety of interactions, including ligand-receptor...

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Chemoproteomics

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specifically labels nucleophilic amino acids in a target's active site, photoaffinity labeling is non-specific, and thus is applicable to labeling a wider...

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Plasma protein

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Pichler, G; Holdt, LM; Teupser, D; Mann, M; Chuang (November 2013). "Photoaffinity labeling of plasma proteins". Molecules. 18 (11): 13831–13859. doi:10...

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Isoxazole

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isoxazole group is developed as a native photo-cross-linker for photoaffinity labeling and chemoproteomic studies. Isoxazoles also form the basis for a...

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Affinity label

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Wofsy L, Metzger H, Singer SJ (November 1962). "Affinity labeling-a general method for labeling the active sites of antibody and enzyme molecules". Biochemistry...

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Frank Westheimer

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transition state (TS) structures vary. Westheimer introduced the idea of photoaffinity labeling of the active site of proteins. The identification of the "active...

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Metribolone

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in androgen receptor (AR) ligand binding assays (LBAs) and as a photoaffinity label for the AR. More precisely, metribolone is the 17α-methylated derivative...

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Juvenile hormone

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9458-9462 Cusson, M.; Prestwich, G.D.; Stay, B.; Tobe, S.S. (1991). "Photoaffinity labeling of allatostatin receptor proteins in the corpora allata of the cockroach...

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Azirine

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(2022). "Developing Isoxazole as a Native Photo-Cross-Linker for Photoaffinity Labeling and Chemoproteomics". Angew. Chem. Int. Ed. 61 (47): e202209947...

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List of methylphenidate analogues

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synthesis, pharmacological evaluation, and dopamine transporter photoaffinity labeling". Bioorganic & Medicinal Chemistry. 19 (1): 504–12. doi:10.1016/j...

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GPCR oligomer

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1983). "Oligomeric structure of muscarinic receptors is shown by photoaffinity labeling: subunit assembly may explain high- and low-affinity agonist states"...

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Nicotinic acid adenine dinucleotide phosphate

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Parrington, J; Galione, A; Marchant, JS; Slama, JT (2012-01-20). "Photoaffinity labeling of high affinity nicotinic acid adenine dinucleotide phosphate (NAADP)-binding...

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Acromelic acid A

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"A simple acromelic acid analog potentially useful for receptor photoaffinity labeling and biochemical studies". Tetrahedron Letters. 45 (20): 3933–3936...

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NDUFS7

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and ND1 subunits in NADH:ubiquinone oxidoreductase established by photoaffinity labeling". Biochimica et Biophysica Acta (BBA) - Bioenergetics. 1506 (1):...

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Murine respirovirus

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early stages of fusion with liposomes as determined by hydrophobic photoaffinity labeling". Proceedings of the National Academy of Sciences of the United...

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CRYM

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in human kidney: kinetic characterization and identification by photoaffinity labeling". Endocrinology. 137 (11): 4563–70. doi:10.1210/en.137.11.4563....

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TDBzcholine

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residues in the receptor and become covalently bound to the receptor. Photoaffinity labeling "Pharmacology of cell excitation". Biochemical Pharmacology Lecture...

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Boyd Haley

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supply the necessary factual basis to support his testimony". Haley has labeled autism as "mad child disease" (akin to mad cow disease), which many autistic...

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Juvenile hormone epoxide hydrolase

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excessive levels of JH. JHEH is a membrane associated protein, and by photoaffinity labeling has been shown to be a 50 kDA protein in Manduca sexta. It has been...

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Blebbistatin

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covalently crosslinking the inhibitor azidoblebbistatin to its target by photoaffinity labeling (PAL). Briefly, upon UV illumination, the aryl-azide moiety in azidoblebbistatin...

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NDUFS8

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and ND1 subunits in NADH:ubiquinone oxidoreductase established by photoaffinity labeling". Biochimica et Biophysica Acta (BBA) - Bioenergetics. 1506 (1):...

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Kevin Lustig

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JT; Weisman, GA (15 November 1993). "Functional Expression and Photoaffinity Labeling of a Cloned P2U Purinergic Receptor". Proceedings of the National...

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SCN8A

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"Activation of Go-proteins by membrane depolarization traced by in situ photoaffinity labeling of galphao-proteins with [alpha32P]GTP-azidoanilide". The Journal...

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Motilin receptor

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ligand-binding domains within the human motilin receptor using photoaffinity labeling". The Journal of Biological Chemistry. 276 (38): 35518–35522. doi:10...

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