Christophe Dessimoz Adrian Schneider Adrian Altenhoff Gaston H. Gonnet
Primary citation
Altenhoff et al.[1]
Release date
2004
Access
Website
omabrowser.org
Download URL
http://omabrowser.org/All/download.html
Web service URL
wsdl
Miscellaneous
Data release frequency
2 releases per year
OMA (Orthologous MAtrix) is a database of orthologs extracted from available complete genomes.[1][2] The orthology predictions of OMA are available in several forms:
OMA Pairs: for a given gene, a list of predicted orthologs in other species is provided.
OMA Groups: a set of genes across different species which are all orthologous.
OMA Hierarchical Groups: the set of all genes that have evolved from a single ancestral gene in a given taxonomic range.
OMA Genome Pair view: the list of all predicted orthologs between two species.
^Altenhoff, Adrian M; Glover, Natasha M; Train, Clément-Marie; Kaleb, Klara; Warwick Vesztrocy, Alex; Dylus, David; de Farias, Tarcisio M; Zile, Karina; Stevenson, Charles; Long, Jiao; Redestig, Henning; Gonnet, Gaston H; Dessimoz, Christophe (2018). "The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces". Nucleic Acids Research. 46 (D1): D477–D485. doi:10.1093/nar/gkx1019. ISSN 0305-1048. PMC 5753216. PMID 29106550.
and 24 Related for: Orthologous MAtrix information
OMA (OrthologousMAtrix) is a database of orthologs extracted from available complete genomes. The orthology predictions of OMA are available in several...
include CHDW and CHDZ in birds. Deep homology EggNOG (database) OrthoDB OrthologousMAtrix (OMA) PhEVER Protein family Protein superfamily TreeFam Syntelog Koonin...
Orlando Museum of Art, an art museum in Orlando, Florida OrthologousMAtrix, a database of orthologous genes across multiple species This disambiguation page...
Dessimoz is known for his management of the OrthologousMAtrix (OMA) which provides information on orthologous proteins. OMA has important applications in...
coiled-coil regions. The gene is conserved in many species and encodes orthologous proteins in eukarya, archaea, and one species of bacteria. The function...
that each orthologous family of representative sequences taken alone gives a distance matrix in close agreement with the consensus matrix. Protein sequences...
family comprises proteins with the same function in different organisms (orthologous sequences) but may also include proteins in the same organism (paralogous...
a sequence is searched that is orthologous to the gene identified in the closest species. Finally, if this orthologous sequence has a disruption in its...
occurring at introns. Orthologous exon shuffling involves combining exons from orthologous genes from different species. Orthologous domain shuffling involves...
(of the 41) being annotated as hypothetical. Furthermore, another 19 orthologous protein groups are present in at least 188/189 P. aeruginosa strains...
promotes differentiation of Th17 cells to Th1 cells, which produce IFN‐γ. Matrix metalloproteinases and NO present in inflamed tissue damage and degrade...
chromosomal localization and characterization of the murine mucin gene orthologous to human MUC4". Eur. J. Biochem. 269 (13): 3150–9. doi:10.1046/j.1432-1033...
of extant filoviruses at ~10,000 years before the present, dating of orthologous endogenous elements (paleoviruses) in the genomes of hamsters and voles...
al. tested the outcome of swapping divergent amino acids between two orthologous proteins of isopropymalate dehydrogenase (IMDH). They substituted 168...
protein. This structure is consistent and nearly identical across all orthologous species. The ZFP62 protein is known to interact with many proteins, as...
which in humans in encoded by the SIRT5 gene and in other species by the orthologous Sirt5 gene. This gene encodes a member of the sirtuin family of proteins...
alignments of the RBP3 marker". OrthoMaM – a biological database of orthologous mammalian markers. The rbp3 evolutionary marker can be found, together...
an ancestral envelope fusion protein which has been replaced by non-orthologous gene replacement with gp64 in AcMNPV, Bombyx mori (BmNPV) and Orgyia...
homologous genes related through speciation events (referred to as “orthologous" genes), their underlying tree should by definition correspond to the...
mesenchymal cells. Mesenchymal condensation is mediated by extracellular matrix and cell adhesion molecules. In the process of chondrogenesis, chondrocytes...
production, and confirmed its function with a Morpholino knockdown. The orthologous gene was then characterized in humans and a one base pair difference...
Batrachochytrium dendrobatidis. A multiple sequence alignment of 20 orthologous protein sequences reveals very strong conservation of the polysaccharide...
Global Information