"SeeMS" redirects here. Not to be confused with seems.
Mass spectrometry is a scientific technique for measuring the mass-to-charge ratio of ions. It is often coupled to chromatographic techniques such as gas- or liquid chromatography and has found widespread adoption in the fields of analytical chemistry and biochemistry where it can be used to identify and characterize small molecules and proteins (proteomics). The large volume of data produced in a typical mass spectrometry experiment requires that computers be used for data storage and processing. Over the years, different manufacturers of mass spectrometers have developed various proprietary data formats for handling such data which makes it difficult for academic scientists to directly manipulate their data. To address this limitation, several open, XML-based data formats have recently been developed by the Trans-Proteomic Pipeline at the Institute for Systems Biology to facilitate data manipulation and innovation in the public sector.[1] These data formats are described here.
^Deutsch EW (December 2012). "File formats commonly used in mass spectrometry proteomics". Molecular & Cellular Proteomics. 11 (12): 1612–21. doi:10.1074/mcp.R112.019695. PMC 3518119. PMID 22956731.
and 25 Related for: Mass spectrometry data format information
file format for data exchange in massspectrometry. JCAMP-DX was initially developed for infrared spectrometry. JCAMP-DX is an ASCII based format and therefore...
Massspectrometry software is used for data acquisition, analysis, or representation in massspectrometry. In protein massspectrometry, tandem mass spectrometry...
Massspectrometry imaging (MSI) is a technique used in massspectrometry to visualize the spatial distribution of molecules, as biomarkers, metabolites...
Mass cytometry is a massspectrometry technique based on inductively coupled plasma massspectrometry and time of flight massspectrometry used for the...
visualization of mass spectrometric and chromatographic data. Its focus is to handle native data files from several massspectrometry systems (e.g. GC/MS...
the high dimensional data generated. In 1994 Tsutomu Nomizu and colleagues at Nagoya University performed the first massspectrometry experiments of single...
(PRoteomics IDEntifications database) is a public data repository of massspectrometry (MS) based proteomics data, and is maintained by the European Bioinformatics...
ions. EI was one of the first ionization techniques developed for massspectrometry. However, this method is still a popular ionization technique. This...
probability and statistics .mgf, (for Mascot generic format) a data file format used by Mascot massspectrometry software Mask generation function, a function...
consistent formats. Specific experimental approaches frequently have their own metadata standards and systems: metadata standards for massspectrometry include...
PMC 5809343. PMID 29168205. "The use of accelerator massspectrometry to obtain early human ADME/PK data" G Lappin & R C Garner Expert Opinion in Pug Metabolite...
Transit Authority .dta, a file format used by: Stata, a statistics application sequest, a tandem massspectrometrydata analysis program used for protein...
referred to as thermal desorption spectroscopy or thermal desorption spectrometry (TDS). When molecules or atoms come in contact with a surface, they adsorb...
can be used together with analytical analysis procedures such as massspectrometry, colorimetry, electrochemical, and electrochemiluminescense. In analogy...
Computational MassSpectrometry (XCMS) technology (a bioinformatics software designed for statistical analysis of massspectrometrydata), created by the...
two-dimensional gel electrophoresis (2-DE), preparative native PAGE, or massspectrometry (MS). However, a recent developed method of quantitative dot blot...
project (as of April 2009). The data exchange format (spML) is also under development. Massspectrometry and massspectrometry informatics documents have been...
emitted by decaying 14 C atoms in a sample. More recently, accelerator massspectrometry has become the method of choice; it counts all the 14 C atoms in the...
analysis. While adoption of affinity selection-massspectrometry (AS-MS) has led to an expansion of assay formats, the general technique follows a simple scheme...
OpenMS is an open-source project for data analysis and processing in massspectrometry and is released under the 3-clause BSD licence. It supports most...
However, many experimental methods (e.g., massspectrometry) require computational analysis of the raw data. Experimental analysis of proteins typically...
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