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List of software for protein model error verification information


This list of software for protein model error verification is a compilation of bioinformatics software frequently employed to check experimental and theoretical models of protein structures for errors.

NAME Description Methods Link Author
PROSESS - Protein Structure Evaluation Suite & Server PROSESS
ResProx - resolution by proxy ResProx
ANOLEA ANOLEA
NQ-Flipper NQ-Flipper
Prosa ProSA
QMEAN QMEAN
Verify3D Verify3D
WHAT_CHECK WHAT_CHECK Gert Vriend

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List of software for protein model error verification

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This list of software for protein model error verification is a compilation of bioinformatics software frequently employed to check experimental and theoretical...

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List of bioinformatics software

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docking software List of RNA structure prediction software List of software for protein model error verification List of protein secondary structure prediction...

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Reliability engineering

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Systems thinking has become more and more important. For software, the CMM model (Capability Maturity Model) was developed, which gave a more qualitative approach...

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Nuclear magnetic resonance spectroscopy of proteins

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Nuclear magnetic resonance spectroscopy of proteins (usually abbreviated protein NMR) is a field of structural biology in which NMR spectroscopy is used...

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Protein structure prediction

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methods. A great number of software tools for protein structure prediction exist. Approaches include homology modeling, protein threading, ab initio methods...

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Design by contract

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2004. The current owner of this trademark is Eiffel Software. Design by contract has its roots in work on formal verification, formal specification and...

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Outline of computer science

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computational models involving quantum superposition of bits. History of computer science List of pioneers in computer science Programmer (Software developer)...

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Protein design

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prediction software Comparison of software for molecular mechanics modeling Korendovych, Ivan (March 19, 2018). "Minimalist design of peptide and protein catalysts"...

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Computational chemistry

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dynamics of a biophysical model for β2-adrenergic and G protein-coupled receptor activation" (PDF). Journal of Molecular Graphics and Modelling. 25 (4):...

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Cyclic redundancy check

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corruption. CRCs can be used for error correction (see bitfilters). CRCs are so called because the check (data verification) value is a redundancy (it expands...

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Ensemble learning

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next base model on the up-weighted errors of the previous base model’s errors, producing an additive model to reduce the final model errors — also known...

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Computer simulation

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include a 1-billion-atom model of material deformation; a 2.64-million-atom model of the complex protein-producing organelle of all living organisms, the...

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Machine learning

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recommendation systems, visual identity tracking, face verification, and speaker verification. Unsupervised learning algorithms find structures in data...

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Metabolic network modelling

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draft metabolic model. The ModelSEED automatically constructs a network of metabolic reactions, gene-protein-reaction associations for each reaction, and...

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Timeline of machine learning

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taylor-kehitelmana [The representation of the cumulative rounding error of an algorithm as a Taylor expansion of the local rounding errors] (PDF) (Thesis) (in Finnish)...

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Generative artificial intelligence

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firms have developed generative AI models. Generative AI has uses across a wide range of industries, including software development, healthcare, finance...

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Structural bioinformatics

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Proteins database STING Molecular modelling List of software for molecular mechanics modeling Protein structure prediction CASP Gu J, Bourne PE (2011)....

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Theoretical computer science

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of mathematics based techniques for the specification, development and verification of software and hardware systems. The use of formal methods for software...

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Sequence alignment

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alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural...

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Circuit design

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Introduction to Hardware Design Verification | What Is Design Verification?". InformIT. 19 August 2005. Diagram of possible design process US guide on...

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Biostatistics

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collection and analysis of data from those experiments and the interpretation of the results. Biostatistical modeling forms an important part of numerous modern...

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Software design description

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software design description (a.k.a. software design document or SDD; just design document; also Software Design Specification) is a representation of...

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Data analysis

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of spreadsheet or statistical software. Once processed and organized, the data may be incomplete, contain duplicates, or contain errors. The need for...

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