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Base pair information


The chemical structure of DNA base-pairs

A base pair (bp) is a fundamental unit of double-stranded nucleic acids consisting of two nucleobases bound to each other by hydrogen bonds. They form the building blocks of the DNA double helix and contribute to the folded structure of both DNA and RNA. Dictated by specific hydrogen bonding patterns, "Watson–Crick" (or "Watson–Crick–Franklin") base pairs (guanine–cytosine and adenine–thymine)[1] allow the DNA helix to maintain a regular helical structure that is subtly dependent on its nucleotide sequence.[2] The complementary nature of this based-paired structure provides a redundant copy of the genetic information encoded within each strand of DNA. The regular structure and data redundancy provided by the DNA double helix make DNA well suited to the storage of genetic information, while base-pairing between DNA and incoming nucleotides provides the mechanism through which DNA polymerase replicates DNA and RNA polymerase transcribes DNA into RNA. Many DNA-binding proteins can recognize specific base-pairing patterns that identify particular regulatory regions of genes.

Intramolecular base pairs can occur within single-stranded nucleic acids. This is particularly important in RNA molecules (e.g., transfer RNA), where Watson–Crick base pairs (guanine–cytosine and adenine–uracil) permit the formation of short double-stranded helices, and a wide variety of non–Watson–Crick interactions (e.g., G–U or A–A) allow RNAs to fold into a vast range of specific three-dimensional structures. In addition, base-pairing between transfer RNA (tRNA) and messenger RNA (mRNA) forms the basis for the molecular recognition events that result in the nucleotide sequence of mRNA becoming translated into the amino acid sequence of proteins via the genetic code.

The size of an individual gene or an organism's entire genome is often measured in base pairs because DNA is usually double-stranded. Hence, the number of total base pairs is equal to the number of nucleotides in one of the strands (with the exception of non-coding single-stranded regions of telomeres). The haploid human genome (23 chromosomes) is estimated to be about 3.2 billion bases long and to contain 20,000–25,000 distinct protein-coding genes.[3][4][5] A kilobase (kb) is a unit of measurement in molecular biology equal to 1000 base pairs of DNA or RNA.[6] The total number of DNA base pairs on Earth is estimated at 5.0×1037 with a weight of 50 billion tonnes.[7] In comparison, the total mass of the biosphere has been estimated to be as much as 4 TtC (trillion tons of carbon).[8]

  1. ^ Spencer M (10 January 1959). "The stereochemistry of deoxyribonucleic acid. II. Hydrogen-bonded pairs of bases". Acta Crystallographica. 12 (1): 66–71. doi:10.1107/S0365110X59000160. ISSN 0365-110X.
  2. ^ Zhurkin VB, Tolstorukov MY, Xu F, Colasanti AV, Olson WK (2005). "Sequence-Dependent Variability of B-DNA". DNA Conformation and Transcription. pp. 18–34. doi:10.1007/0-387-29148-2_2. ISBN 978-0-387-25579-8.
  3. ^ Moran LA (2011-03-24). "The total size of the human genome is very likely to be ~3,200 Mb". Sandwalk.blogspot.com. Retrieved 2012-07-16.
  4. ^ "The finished length of the human genome is 2.86 Gb". Strategicgenomics.com. 2006-06-12. Retrieved 2012-07-16.
  5. ^ International Human Genome Sequencing Consortium (October 2004). "Finishing the euchromatic sequence of the human genome". Nature. 431 (7011): 931–945. Bibcode:2004Natur.431..931H. doi:10.1038/nature03001. PMID 15496913.
  6. ^ Cockburn AF, Newkirk MJ, Firtel RA (December 1976). "Organization of the ribosomal RNA genes of Dictyostelium discoideum: mapping of the nontranscribed spacer regions". Cell. 9 (4 Pt 1): 605–613. doi:10.1016/0092-8674(76)90043-X. PMID 1034500. S2CID 31624366.
  7. ^ Nuwer R (18 July 2015). "Counting All the DNA on Earth". The New York Times. New York. ISSN 0362-4331. Archived from the original on 2022-01-01. Retrieved 2015-07-18.
  8. ^ "The Biosphere: Diversity of Life". Aspen Global Change Institute. Basalt, CO. Archived from the original on 2014-11-10. Retrieved 2015-07-19.

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Base pair

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wobble base pair is a pairing between two nucleotides in RNA molecules that does not follow Watson-Crick base pair rules. The four main wobble base pairs are...

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A Hoogsteen base pair is a variation of base-pairing in nucleic acids such as the A•T pair. In this manner, two nucleobases, one on each strand, can be...

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oriented in opposite directions, which permits base pairing and complementarity between the base-pairs, all which is essential for replicating or transcribing...

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among other things, different base pairing and base stacking properties. Examples include universal bases, which can pair with all four canonical bases...

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Nucleobase

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building blocks of nucleic acids. The ability of nucleobases to form base pairs and to stack one upon another leads directly to long-chain helical structures...

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which base pair together. In B-DNA, the most common double helical structure found in nature, the double helix is right-handed with about 10–10.5 base pairs...

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two separate polynucleotide strands are bound together, according to base pairing rules (A with T and C with G), with hydrogen bonds to make double-stranded...

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UV rays, X-rays or extreme heat, or chemical (molecules that misplace base pairs or disrupt the helical shape of DNA). Mutagens associated with cancers...

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to the transmission speed in Mbit/s. BASE denotes that baseband transmission is used. The T designates twisted-pair cable. Where there are several standards...

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untwisted balanced pair, a twisted pair reduces electromagnetic radiation from the pair and crosstalk between neighbouring pairs and improves rejection...

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erythromycin base Base, one of the three terminals of a Bipolar junction transistor BASE experiment, an antiproton experiment at CERN Base pair, a pair of connected...

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informational polymer consisting of xeno nucleic acids (XNA), different base pairs, using non-canonical amino acids and an altered genetic code. So far cells...

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electron pair from a Lewis base to form a Lewis adduct. A Lewis base, then, is any species that has a filled orbital containing an electron pair which is...

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hydrogen bonds are called a base pair (often abbreviated bp). In the canonical Watson-Crick base pairing, adenine (A) forms a base pair with thymine (T) and...

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Nucleic acid

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or base-pairs selected from the five primary, or canonical, nucleobases. RNA usually forms a chain of single bases, whereas DNA forms a chain of base pairs...

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partner strand. Genes are arranged linearly along long chains of DNA base-pair sequences. In bacteria, each cell usually contains a single circular genophore...

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aspects of DNA. Because cytosine / guanine base-pairing is generally stronger than adenine / thymine base-pairing, the amount of cytosine and guanine in a...

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one of the 23 pairs of chromosomes in humans. Chromosome 21 is both the smallest human autosome and chromosome, with 45 million base pairs (the building...

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their capacity to recognize and cut large DNA sequences (from 14 to 40 base pairs). The most widespread and best known meganucleases are the proteins in...

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