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B3 domain information


B3 DNA binding domain
B3 DNA binding domain of RAV1
Identifiers
SymbolB3_domain
PfamPF02362
InterProIPR003340
PROSITEPS50863
SCOP21wid / SCOPe / SUPFAM
CDDcd10017
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary
PDB1wid​, 1yel

The B3 DNA binding domain (DBD) is a highly conserved domain found exclusively in transcription factors (≥40 species) (Pfam PF02362) combined with other domains (InterPro: IPR003340). It consists of 100-120 residues, includes seven beta strands and two alpha helices that form a DNA-binding pseudobarrel protein fold (SCOP 117343); it interacts with the major groove of DNA.[1]

  1. ^ Cite error: The named reference pmid15548737 was invoked but never defined (see the help page).

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B3 domain

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transcription factor RAV1 the N-terminal AP2 domain binds 5'-CAACA-3' sequence, while the C-terminal highly conserved B3 domain binds 5'-CACCTG-3' sequence. Through...

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(Basic-region leucine zipper) class of eukaryotic transcription factors. The bZIP domain is 60 to 80 amino acids in length with a highly conserved DNA binding basic...

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