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WD40 repeat information


WD domain, G-beta repeat
Ribbon diagram of the C-terminal WD40 domain of Tup1 (a transcriptional corepressor in yeast), which adopts a 7-bladed beta-propeller fold. Ribbon is colored from blue (N-terminus) to red (C-terminus).[1]
Identifiers
SymbolWD40
PfamPF00400
Pfam clanCL0186
InterProIPR001680
PROSITEPDOC00574
SCOP21gp2 / SCOPe / SUPFAM
CDDcd00200
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary
PDB1b9x​, 1b9y​, 1erj​, 1gg2​, 1got​, 1gp2​, 1gxr​, 1nex​, 1nr0​, 1omw​, 1p22​, 1pev​, 1pgu​, 1pi6​, 1s4u​, 1sq9​, 1tbg​, 1u4c​, 1xhm​, 1yfq​, 2bcj​, 2ce8​, 2ce9​, 2trc

The WD40 repeat (also known as the WD or beta-transducin repeat) is a short structural motif of approximately 40 amino acids, often terminating in a tryptophan-aspartic acid (W-D) dipeptide.[2] Tandem copies of these repeats typically fold together to form a type of circular solenoid protein domain called the WD40 domain.

  1. ^ PDB: 1erj​; Sprague ER, Redd MJ, Johnson AD, Wolberger C (June 2000). "Structure of the C-terminal domain of Tup1, a corepressor of transcription in yeast". EMBO J. 19 (12): 3016–27. doi:10.1093/emboj/19.12.3016. PMC 203344. PMID 10856245.
  2. ^ Neer EJ, Schmidt CJ, Nambudripad R, Smith TF (September 1994). "The ancient regulatory-protein family of WD-repeat proteins". Nature. 371 (6495): 297–300. Bibcode:1994Natur.371..297N. doi:10.1038/371297a0. PMID 8090199. S2CID 600856.

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WD40 repeat

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The WD40 repeat (also known as the WD or beta-transducin repeat) is a short structural motif of approximately 40 amino acids, often terminating in a tryptophan-aspartic...

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WD40

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dictionary. WD40 may refer to: WD-40, widely available water-displacing spray WD-40 Company, the company manufacturing the spray WD40 repeat, a structural...

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Protein tandem repeats

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Tandem repeat proteins frequently function as protein-protein interaction modules. The WD40 repeat is a prime example of this function. Tandem repeats are...

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Trichome

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by three transcription factors: R2R3 MYB, basic helix-loop-helix, and WD40 repeat. The three groups of TFs form a trimer complex (MBW) and activate the...

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WIPI1

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WD repeat domain phosphoinositide-interacting protein 1 (WIPI-1), also known as Atg18 protein homolog (ATG18) and WD40 repeat protein interacting with...

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Toroid repeat proteins

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of individual repeats is not arbitrary. In the case of WD40 repeats (perhaps the largest family of closed solenoids) the number of repeats can range from...

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DCAF11

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WD Repeat Domain 23 (WDR23) is a protein that in humans is encoded by the DCAF11 gene. DCAF11 is a WD40 repeat protein, containing seven repeats of the...

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NACHT domain

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(InterPro: IPR004020), the HEAT repeat domain (InterPro: IPR004155), the WD40 repeat (InterPro: IPR001680), the leucine-rich repeat (LRR) or the BIR repeat (InterPro: IPR001370)...

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WDR53

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sapiens. It has short up and down stream untranslated regions as well as WD40 repeat regions which have been linked to various functions (signal transduction...

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Arabidopsis thaliana

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ld produces a homeodomain and Blazquez et al 2001 that fve produces a WD40 repeat. The UVR8 protein detects UV-B light and mediates the response to this...

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D domain

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the F-box domain, which is a conserved dimerization motif located in WD40 repeat F box proteins, such as Cdc4, Met30, β-TrCP and Pop1/2. But Vts1, a RNA...

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Nucleoporin

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consisting of repeats that can be stacked together as bulk building blocks. There are beta-propeller domain with similarities to WD40 repeats, and more interestingly...

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H3K4me3

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methyltransferase complexes containing a protein WDR5, which contains the WD40 repeat protein motif. WDR5 associates specifically with dimethylated H3K4 and...

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WDR90

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acids, and has a molecular weight of 187.7 kDa. It contains multiple WD40 repeat domains and one domain of unknown function. This protein is conserved...

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SMU1

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WD40 repeat-containing protein SMU1 is a protein that in humans is encoded by the SMU1 gene. GRCh38: Ensembl release 89: ENSG00000122692 – Ensembl, May...

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GRWD1

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Glutamate-rich WD repeat-containing protein 1 is a WD40 repeat protein that in humans is encoded by the GRWD1 gene. It localizes to the nucleus and has...

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TBL3

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this gene has sequence similarity with members of the WD40 repeat-containing protein family. The WD40 group is a large family of proteins, which appear to...

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Wd repeat containing planar cell polarity effector

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repeat containing planar cell polarity effector is a protein that in humans is encoded by the WDPCP gene. This gene encodes a cytoplasmic WD40 repeat...

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Kelch motif

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that connect the 15 nurse cells to the developing oocyte in Drosophila. WD40 repeat Kelch protein Ito N, Phillips SE, Stevens C, et al. (March 1991). "Novel...

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APAF1

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domain (NB-ARC), few short helical domains and then several copies of the WD40 repeat domain. Upon binding cytochrome c and dATP, this protein forms an oligomeric...

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Solenoid protein domain

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of individual repeats is not arbitrary. In the case of WD40 repeats (perhaps the largest family of closed solenoids) the number of repeats can range from...

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TBL1XR1

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this gene has sequence similarity with members of the WD40 repeat-containing protein family. The WD40 group is a large family of proteins that appear to...

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Deficiency of RbAp48 protein and memory loss

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encodes a nuclear protein, which belongs to a highly conserved family of WD40 repeat. This gene is present in many protein complexes that are involved in...

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DDB1

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protein-macromolecule adaptor activity cullin family protein binding WD40-repeat domain binding protein-containing complex binding Cellular component...

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WDR45L

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a member of the WIPI or SVP1 family of WD40 repeat-containing proteins. The protein contains seven WD40 repeats that are thought to fold into a beta-propeller...

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EZH2

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highly dependent upon its recruitment by the PRC2 complex. In particular, WD40-repeat protein embryonic ectoderm development (EED) and zinc finger protein...

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Nucleoporin 43

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[supplied by OMIM] Along with other nucleoporins. It folds into a canonical WD40 repeat domain. High expression of NUP43 in breast cancer is associated with...

Word Count : 794

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