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Saturation mutagenesis information


Saturation mutagenesis of a single position in a theoretical 10-residue protein. The wild type version of the protein is shown at the top, with M representing the first amino acid methionine, and * representing the termination of translation. All 19 mutants at position 5 are shown below.

Site saturation mutagenesis (SSM), or simply site saturation, is a random mutagenesis technique used in protein engineering, in which a single codon or set of codons is substituted with all possible amino acids at the position.[1] There are many variants of the site saturation technique, from paired site saturation (saturating two positions in every mutant in the library) to scanning site saturation (performing a site saturation at every site in the protein, resulting in a library of size [20 x (number of residues in the protein)] that contains every possible point mutant of the protein).

  1. ^ Reetz, M. T.; Carballeira J. D. (2007). "Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes". Nature Protocols. 2 (4): 891–903. doi:10.1038/nprot.2007.72. PMID 17446890. S2CID 37361631.

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Saturation mutagenesis

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possible point mutant of the protein). Saturation mutagenesis is commonly achieved by site-directed mutagenesis PCR with a randomised codon in the primers...

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Sequence saturation mutagenesis

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Sequence saturation mutagenesis (SeSaM) is a chemo-enzymatic random mutagenesis method applied for the directed evolution of proteins and enzymes.[citation...

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Saturation

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Oxygen saturation, a clinical measure of the amount of oxygen in a patient's blood Saturation pollination, a pollination technique Saturated mutagenesis, a...

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Mutagenesis

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code. In nature mutagenesis can lead to cancer and various heritable diseases, and it is also a driving force of evolution. Mutagenesis as a science was...

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Protein engineering

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Recursive ensemble mutagenesis then utilizes information from previous combinatorial cassette mutagenesis. Codon cassette mutagenesis allows you to insert...

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Genetic saturation

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between eukaryotes, archaea, and eubacteria. Gene site saturation mutagenesis (GSSM) is mutagenesis technique of one or more codons in a gene to create a...

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Golden Gate Cloning

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Golden Gate Cloning principle can also be applied to perform mutagenesis termed Golden Mutagenesis. The technology is easy to implement as a web tool is available...

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Directed evolution

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Protein design Expanded genetic code Xenobiology Mutagenesis: Random mutagenesis Saturated mutagenesis Staggered extension process Selection and screening:...

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Forward genetics

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involves the use of several mutagenesis processes to induce DNA mutations at random which may include: Chemical mutagenesis is an easy tool that is used...

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Sesam

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in some lasers Sequence saturation mutagenesis (SeSaM), a molecular biology method for diversity creation by random mutagenesis Sesame (disambiguation)...

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Acarbose

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transglycosylation activity of Thermus maltogenic amylase by combinatorial saturation mutagenesis". Journal of Microbiology and Biotechnology. 18 (8): 1401–1407....

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Bruce Beutler

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approximately 200-fold, and permits ongoing measurement of genome saturation as mutagenesis progresses. Not only qualitative phenotypes, but subtle quantitative...

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Hedgehog signaling pathway

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of the segmented anterior-posterior body axis of the fly; their "saturation mutagenesis" technique resulted in the discovery of a group of genes involved...

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Cytochrome P450 engineering

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mutations can be introduced either semi-rationally or randomly via site-saturation mutagenesis. The resulting P450 mutant (typically mutant library) is then screened...

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Expanded genetic code

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Muranaka N, Hohsaka T (March 2008). "Four-base codon-mediated saturation mutagenesis in a cell-free translation system". Journal of Bioscience and Bioengineering...

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Ulrich Schwaneberg

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ISSN 0003-2697. PMID 20646988. Wong, T. S. (13 February 2004). "Sequence saturation mutagenesis (SeSaM): a novel method for directed evolution". Nucleic Acids Research...

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Jay Short

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via metagenomics, in addition to evolution technologies gene site saturation mutagenesis (GSSM) and GeneReassembly, and was the first to combine these discovery...

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Kevin Struhl

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8419. PMC 390927. PMID 3909145. Chen, W; Struhl, K (1988-04-01). "Saturation mutagenesis of a yeast his3 TATA element: genetic evidence for a specific TATA-binding...

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Thomas Kaufman

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there he did his graduate work with Burke Judd. His work focused on saturation mutagenesis as well as the developmental genetics of the Zeste- White region...

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Georg Jander

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Kenneth J.; Last, Robert L. (2003-01-01). "Ethylmethanesulfonate Saturation Mutagenesis in Arabidopsis to Determine Frequency of Herbicide Resistance"....

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Oncogenomics

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These models are generated by methods including retroviral insertion mutagenesis or graft transplantation of cancerous cells. Mutations provide the raw...

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Colorectal cancer

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"Mutator pathways unleashed by epigenetic silencing in human cancer". Mutagenesis. 22 (4): 247–253. doi:10.1093/mutage/gem009. PMID 17412712. Lahtz C,...

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Genetic screen

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A genetic screen or mutagenesis screen is an experimental technique used to identify and select individuals who possess a phenotype of interest in a mutagenized...

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