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RaptorX
Developer(s)
XU Jinbo
LI Ming
PENG Jian
ZHU Jianwei
WANG Sheng
Initial release
2012; 12 years ago (2012)
Available in
English
Type
Bioinformatics tool for protein structure prediction
License
NonCommercial, case-by-case
Website
raptorx.uchicago.edu
RaptorX is a software and web server for protein structure and function prediction that is free for non-commercial use. RaptorX is among the most popular methods for protein structure prediction.[1][2][3][4][5] Like other remote homology recognition/protein threading techniques, RaptorX is able to regularly generate reliable protein models when the widely used PSI-BLAST cannot. However, RaptorX is also significantly different from those profile-based methods (e.g., HHPred and Phyre2) in that RaptorX excels at modeling of protein sequences without a large number of sequence homologs by exploiting structure information. RaptorX Server has been designed to ensure a user-friendly interface for users inexpert in protein structure prediction methods.
^Peng, Jian; Jinbo Xu (Oct 2011). "RaptorX: exploiting structure information for protein alignment by statistical inference". Proteins. 79 (Suppl 10): 161–71. doi:10.1002/prot.23175. PMC 3226909. PMID 21987485.
RaptorX is a software and web server for protein structure and function prediction that is free for non-commercial use. RaptorX is among the most popular...
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Name Method description Type Link Initial release RaptorX-SS8 predict both 3-state and 8-state secondary structure using conditional neural fields from...
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S2CID 199469523. Wang, Sheng; Li, Wei; Liu, Shiwang; Xu, Jinbo (2016-07-08). "RaptorX-Property: a web server for protein structure property prediction". Nucleic...
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