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Predictprotein information


PredictProtein
Original author(s)Burkhard Rost
Developer(s)Guy Yachdav Laszlo Kajan
Initial release1992
Stable release
1.0.88
Operating systemUNIX-based
TypeBioinformatics
LicenseGPLv2
Websitewww.predictprotein.org Edit this on Wikidata

PredictProtein (PP) is an automatic service that searches up-to-date public sequence databases, creates alignments, and predicts aspects of protein structure and function. Users send a protein sequence and receive a single file with results from database comparisons and prediction methods. PP went online in 1992 at the European Molecular Biology Laboratory; since 1999 it has operated from Columbia University and in 2009 it moved to the Technische Universität München. Although many servers have implemented particular aspects, PP remains the most widely used public server for structure prediction: over 1.5 million requests from users in 104 countries have been handled; over 13000 users submitted 10 or more different queries. PP web pages are mirrored in 17 countries on 4 continents. The system is optimized to meet the demands of experimentalists not experienced in bioinformatics. This implied that we focused on incorporating only high-quality methods, and tried to collate results omitting less reliable or less important ones.

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Predictprotein

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PredictProtein (PP) is an automatic service that searches up-to-date public sequence databases, creates alignments, and predicts aspects of protein structure...

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Protein secondary structure

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Bromberg Y, Schneider R, Vriend G, Sander C, Ben-Tal N, Rost B (2014). "PredictProtein—an open resource for online prediction of protein structural and functional...

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List of protein secondary structure prediction programs

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secondary structure and solvent accessibility Webserver server and API 1998 PredictProtein Profile-based neural network Webserver server 1992 PSIPRED two feed-forward...

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TMEM242

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Retrieved 2019-05-15. "PredictProtein - Protein Sequence Analysis, Prediction of Structural and Functional Features". predictprotein.org. Retrieved 2019-05-15...

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Hp53int1

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1093/nar/gku1267. PMC 4383998. PMID 25514926. "Welcome to PredictProtein!". predictprotein.org. Retrieved 2022-12-16. "AlphaFold Protein Structure Database"...

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CXorf38 Isoform 1

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Retrieved 2019-05-01. "PredictProtein - Protein Sequence Analysis, Prediction of Structural and Functional Features". www.predictprotein.org. Retrieved 2019-04-25...

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Proser2

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UniProt [http://www.uniprot.org/uniprot/] Predict Protein. [https://www.predictprotein.org/] PELE. SDSC Biology Workbench [http://workbench.sdsc.edu/] SOSUI...

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FAM193A

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enzyme. The predicted secondary structure of FAM193A examined through predictprotein.org showed that more than ¾ of the residues exposing more than 16% of...

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C11orf91

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Prediction Server. JPred 4. Retrieved 5 December 2023. Predict Protein Tool. Predictprotein. Retrieved 5 December 2023. Ali2D Tool. MPI Bioinformatics Toolkit....

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MFSD6L

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requires |journal= (help) "PredictProtein - Protein Sequence Analysis, Prediction of Structural and Functional Features". predictprotein.org. Retrieved 2021-12-14...

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YIF1A

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Retrieved 2020-07-28. "PredictProtein - Protein Sequence Analysis, Prediction of Structural and Functional Features". www.predictprotein.org. Retrieved 2020-07-28...

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ARMH1

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1038/s41586-021-03819-2. PMC 8371605. PMID 34265844. Rost B, Liu J (July 2003). "The PredictProtein server". Nucleic Acids Research. 31 (13): 3300–3304. doi:10.1093/nar/gkg508...

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List of protein subcellular localization prediction tools

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Y, Schneider R, Vriend G, Sander C, Ben-Tal N, Rost B (July 2014). "PredictProtein--an open resource for online prediction of protein structural and functional...

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TMEM271

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Retrieved 2022-12-08. "PredictProtein - Protein Sequence Analysis, Prediction of Structural and Functional Features". predictprotein.org. Retrieved 2022-12-08...

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C6orf222

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Retrieved 13 April 2015. Rost, B; Yachdav, G; Liu, J (2004). "The PredictProtein Server". Nucleic Acids Research. 32 (Web Server issue): 321–326. doi:10...

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Fam89A

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cytoskeleton (8.7%), followed by the cytoplasm having the lowest score (4.3%). PredictProtein tool supports the prediction of subcellular localization in the nucleus...

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Burkhard Rost

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internet server for protein structure prediction and sequence analysis, Predictprotein, that was launched in 1992, and has been continuously in service ever...

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C1orf198

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2017. Nucleic Acids Res.45, W550–W553 (2017). B. Rost, J. Liu, The PredictProtein server. Nucleic Acids Res.31, 3300–3304 (2003). Chojnacki S, Cowley...

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ARMH3

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results for c10orf76". Retrieved 18 April 2013.[permanent dead link] "PredictProtein - Sequence Analysis, Structure and Function Prediction". Retrieved 18...

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FAM227B

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027. PMID 26885862. "PredictProtein - Protein Sequence Analysis, Prediction of Structural and Functional Features". predictprotein.org. Retrieved 2021-07-31...

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KIAA0825

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PMC 419468. PMID 15141026. Rost B, Yachdav G, Liu J (July 2004). "The PredictProtein server". Nucleic Acids Research. 32 (Web Server issue): W321–6. doi:10...

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ZC3H11B

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(3): 367–73. doi:10.1016/j.sbi.2005.04.004. PMID 15963892. "PredictProtein". PredictProtein. Dhar J, Chakrabarti P (June 2015). "Defining the loop structures...

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WDR53

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output". wolfpsort.hgc.jp. Retrieved 2018-05-06. "Protein Predictions". predictprotein.org. 2018-05-06. Retrieved 2018-05-11. Smith, Temple F; Gaitatzes, Chrysanthe;...

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