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PSI Protein Classifier information


PSI Protein Classifier is a program generalizing the results of both successive and independent iterations of the PSI-BLAST program. PSI Protein Classifier determines belonging of the found by PSI-BLAST proteins to the known families. The unclassified proteins are grouped according to similarity. PSI Protein Classifier allows to measure evolutionary distances between families of homologous proteins by the number of PSI-BLAST iterations.

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PSI Protein Classifier

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PSI-BLAST iterations. PSI Protein Classifier D.G. Naumoff and M. Carreras. PSI Protein Classifier: a new program automating PSI-BLAST search results. Molecular...

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Protein structure prediction

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Protein structure prediction is the inference of the three-dimensional structure of a protein from its amino acid sequence—that is, the prediction of...

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Amyloid

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Amyloids are aggregates of proteins characterised by a fibrillar morphology of typically 7–13 nm in diameter, a β-sheet secondary structure (known as cross-β)...

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List of biological databases

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provided. Human Protein Atlas (HPA): a public database with expression profiles of human protein coding genes both on mRNA and protein level in tissues...

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Omega

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of a double integral. In topos theory, the (codomain of the) subobject classifier of an elementary topos. In combinatory logic, the looping combinator,...

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List of protein subcellular localization prediction tools

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SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST". Nucleic Acids Research. 32 (Web Server issue):...

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BioJava

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in PSI-MOD, RESID and RCSB PDB. The module also provides an API for detecting pre-, co-, and post-translational protein modifications within protein structures...

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Residue depth

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values from protein sequences. Yuan and Wang proposed a computational framework that uses sequential evolutionary information contained in PSI-BLAST profiles...

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Reverse osmosis

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2–17 bar (30–250 psi) for fresh and brackish water, and 40–82 bar (600–1200 psi) for seawater. Seawater has around 27 bar (390 psi) natural osmotic pressure...

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Alpha helix

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(February 2003). "Structure validation by Calpha geometry: phi,psi and Cbeta deviation". Proteins. 50 (3): 437–50. doi:10.1002/prot.10286. PMID 12557186. S2CID 8358424...

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Orphan gene

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Miller W, Lipman DJ (September 1997). "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs". Nucleic Acids Research. 25 (17):...

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List of disorder prediction software

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methods exploit the sequence signatures of disorder to predict whether a protein is disordered, given its amino acid sequence. The table below, which was...

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Biology

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is reduced to NADPH, a process that takes place in a protein complex called photosystem I (PSI). The transport of electrons is coupled to the movement...

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Fungus

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appressorium, directed against the plant epidermis, can exceed 8 megapascals (1,200 psi). The filamentous fungus Paecilomyces lilacinus uses a similar structure...

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Epitranscriptome

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epitranscriptomics. Members of the YTH domain protein family act as "readers" of m6A. The study of these proteins has been key in understanding the functions...

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Pressure ulcer

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thereby increasing the risk of pressure ulcer development. These factors are protein-calorie malnutrition, microclimate (skin wetness caused by sweating or...

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DNA polymerase

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"DnaX complex of Escherichia coli DNA polymerase III holoenzyme. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta'...

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Volume Area Dihedral Angle Reporter

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stereochemical quality of a protein structure, with most high-quality proteins exhibiting a relatively tight clustering of phi/psi angles and relatively little...

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Bayesian network

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Memory-prediction framework Mixture distribution Mixture model Naive Bayes classifier Plate notation Polytree Sensor fusion Sequence alignment Structural equation...

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Topological data analysis

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G\Gamma } and ψ : G ⇒ F K {\displaystyle \psi :G\Rightarrow FK} , such that ( ψ Γ ) = φ F η K Γ {\displaystyle (\psi \Gamma )=\varphi F\eta _{K\Gamma }} and...

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History of chemistry

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( t ) ⟩ = i ℏ d d t | ψ ( t ) ⟩ {\displaystyle H(t)|\psi (t)\rangle =i\hbar {\frac {d}{dt}}|\psi (t)\rangle } In 1926 at the age of 39, Austrian theoretical...

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List of Doctor Who universe creatures and aliens

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Trenzalore. A Terileptil is briefly shown as one of the criminals displayed by Psi in "Time Heist" (2014). According to the Virgin Missing Adventures novel...

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List of OBO Foundry ontologies

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Sean L; Garavelli, John S (August 2008). "The PSI-MOD community standard for representation of protein modification data". Nature Biotechnology. 26 (8):...

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Wine

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of the gas behind the cork, which can be up to 6 standard atmospheres (88 psi). This refers to sweet wines that have a high level of sugar remaining after...

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Timeline of chemistry

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molecular structure. 1827 William Prout classifies biomolecules into their modern groupings: carbohydrates, proteins and lipids. 1828 Friedrich Wöhler synthesizes...

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