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NeXtProt information


neXtProt
Content
DescriptionneXtProt: exploring the universe of human proteins
Data types
captured
Protein annotation
OrganismsHuman
Contact
Research centerSwiss Institute of Bioinformatics
LaboratoryCALIPHO
Primary citationGaudet, et al. (2016)[1]
Access
Websitewww.nextprot.org
Tools
WebSearch, BLAST, SNORQL
Miscellaneous
LicenseCreative Commons Attribution 4.0
VersioningYes
Data release
frequency
Data: 3 times per year
Curation policyYes - manual and automatic
Bookmarkable
entities
Yes - individual protein entries views and searches

neXtProt is an on-line knowledge platform on human proteins. It strives to be a comprehensive resource that provides a variety of types of information on human proteins, such as their function, subcellular location, expression, interactions and role in diseases. The major part of the information in neXtProt [2] is obtained from the UniProt Swiss-Prot database but it is complemented by data originating from high-throughput studies with an emphasis on proteomics. neXtProt offers also an advanced search capacity based on the SPARQL technology as well as an API that allows to programmatically extract the data stored in the resource. It is developed by the CALIPHO group[3] directed by Amos Bairoch and Lydie Lane of the Swiss Institute of Bioinformatics (SIB).

  1. ^ Gaudet, P; Michel, PA; Zahn-Zabal, M; Britan, A; Cusin, I; Domagalski, M; Duek, PD; Gateau, A; Gleizes, A; Hinard, V; de Laval, VR; Lin, J; Nikitin, F; Schaeffer, M; Teixeira, D; Lane, L; Bairoch, A (29 November 2016). "The neXtProt knowledgebase on human proteins: 2017 update". Nucleic Acids Research. 45 (D1): D177–D182. doi:10.1093/nar/gkw1062. PMC 5210547. PMID 27899619.
  2. ^ Lane Lydie (2012). "neXtProt: a knowledge platform for human proteins". Nucleic Acids Research. 40 (Database issue): D76–D83. doi:10.1093/nar/gkr1179. PMC 3245017. PMID 22139911.
  3. ^ CALIPHO group, on the web site of the SIB

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NeXtProt

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in diseases. The major part of the information in neXtProt is obtained from the UniProt Swiss-Prot database but it is complemented by data originating...

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List of biological databases

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databases cross-referenced in the UniProtKB. Most of these databases are cross-referenced with UniProt / UniProtKB so that identifiers can be mapped to...

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Swiss Institute of Bioinformatics

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international standing, including UniProtKB/Swiss-Prot (curated protein sequence database providing a high level of annotation), neXtProt (human-centric protein knowledge...

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Human Proteome Project

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informatics are the responsibility of Lydie Lane at SIB, Geneva, Switzerland (NeXtProt). All data generated as part of HPP contributions are deposited to one...

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Metal transporter CNNM3

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Library of Medicine. Retrieved 2019-11-15. "CNNM3 - Function". www.nextprot.org. NeXtProt. Retrieved 2019-11-15. Giménez-Mascarell, Paula; González-Recio...

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BANP

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Information". www.ncbi.nlm.nih.gov. Retrieved 2022-05-05. www.nextprot.org https://www.nextprot.org/entry/NX_Q8N9N5/#!. Retrieved 2022-05-05. {{cite web}}:...

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PeptideAtlas

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Zhi Sun and Dave Campbell. Human proteome project Human Protein Atlas NeXtProt PeptideAtlas web site (www.peptideatlas.org) Desiere, Frank; Deutsch, Eric...

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Amos Bairoch

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directed by himself and Lydie Lane, he is involved in the development of neXtProt a resource which aims to provide life scientists with a broad spectrum...

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Helicase

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Cell. 80 (6): 837–845. doi:10.1016/0092-8674(95)90287-2. PMID 7697714. Nextprot Online Protein Database. " ATRX-Transcriptional regulator ATRX.", Retrieved...

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Proteome

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detections of proteins with ultra low concentrations. Databases such as neXtprot and UniProt are central resources for human proteomic data. Metabolome Cytome...

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TMEM156

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"TMEM156 - Transmembrane protein 156 - human protein (Proteomics)". www.nextprot.org. Retrieved 2016-05-04. "TopPred". mobyle.pasteur.fr. Retrieved 2016-05-04...

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CCDC144A

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Biotechnology Information, U.S. National Library of Medicine. "NCBI: Gene". "NeXtProt". "NCBI". "NCBI: Gene". "GeneCards". "GenBank: The Human Gene Compendium"...

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PER3

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Ubiquitinated. Modification sites at PhosphoSitePlus Modification sites at neXtProt GRCh38: Ensembl release 89: ENSG00000049246 – Ensembl, May 2017 GRCm38:...

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FAM166B

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FAM166B". Gaudet, P; Argout-Put, G; Cusin, I; et al. (December 3, 2013). "neXtProt: Organizing Protein Knowledge in the Context of Human Proteome Projects"...

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C11ORF97

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[Homo sapiens]". National Center for Bioinformatics (NCBI). "C11orf97". neXtProt. SIB Swiss Institute of Bioinformatics. Retrieved 2023-12-07. "DISEASES...

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TMEM81

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the original on 2016-06-02. Retrieved 2022-02-13. "TMEM81 - Proteomics". neXtProt. Swiss Institute of Bioinformatics. "Protter". ETH Zurich Wollscheid Lab...

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TMEM82

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L (December 2018). "Exploring the Uncharacterized Human Proteome Using neXtProt". Journal of Proteome Research. 17 (12): 4211–4226. doi:10.1021/acs.jproteome...

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PROB1

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Bioinformatics. (2018, September 3). PROB1 - Proteomics. Retrieved from https://www.nextprot.org/entry/NX_E7EW31/proteomics The Human Protein Atlas. (2015). PROB1....

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DMAC1

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Post-translational Modifications". flipper.diff.org. University of Turin. "Nextprot:TMEM261 » Transmembrane protein 261". Dash A, et al. (2002). "Changes in...

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ATP6V1G2

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interaction network". string-db.org. Retrieved 2023-04-25. "ATP6V1G2". www.nextprot.org. Retrieved 2023-04-25. "ATP6V1G2 Gene - GeneCards | VATG2 Protein |...

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METTL26

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"C16orf13 - UPF0585 protein C16orf13 - human protein (Identifiers)". Nextprot.org. Retrieved 2012-05-18. "Breast Cancer Database". Itb.cnr.it. Retrieved...

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APOL2

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(4): 273–285. doi:10.1093/molehr/gap108. PMC 2834406. PMID 20008415. "Nextprot Gene: APOL2 apolipoprotein L, 2". Luo A, Jung J, Longley M, Rosoff DB,...

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FAM71E1

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bioinf.umbc.edu. Retrieved 2018-05-07. "CALIPHO Bioinformatics". www.nextprot.org. SIB Swiss Institute of Bioinformatics. "Multiple Sequence Alignment...

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Association of Biomolecular Resource Facilities

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development of community resources such as UniProtKB/Swiss-Prot knowledgebase, PROSITE, ENZYME, and neXtProt. 2017 Sir Shankar Balasubramanian and David...

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USP27X

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Cellular location nucleus, cytoplasm Databases accession ID HumanCyc HS17606 UniProt, nextProt A6NNY8 HGNC HGNC:13486 proteomics DB A6NNY8 biogrid 133302...

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