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neXtProt
Content
Description
neXtProt: exploring the universe of human proteins
Data types captured
Protein annotation
Organisms
Human
Contact
Research center
Swiss Institute of Bioinformatics
Laboratory
CALIPHO
Primary citation
Gaudet, et al. (2016)[1]
Access
Website
www.nextprot.org
Tools
Web
Search, BLAST, SNORQL
Miscellaneous
License
Creative Commons Attribution 4.0
Versioning
Yes
Data release frequency
Data: 3 times per year
Curation policy
Yes - manual and automatic
Bookmarkable entities
Yes - individual protein entries views and searches
neXtProt is an on-line knowledge platform on human proteins.
It strives to be a comprehensive resource that provides a variety of
types of information on human proteins, such as their function,
subcellular location, expression, interactions and role in diseases.
The major part of the information in neXtProt
[2]
is obtained from the UniProt Swiss-Prot database but it is complemented by data originating from high-throughput studies with an emphasis on proteomics. neXtProt offers also an advanced search capacity based on the SPARQL technology as well as an API that allows to programmatically extract the data stored in the resource. It is developed by the CALIPHO group[3] directed by Amos Bairoch and Lydie Lane of the Swiss Institute of Bioinformatics (SIB).
^Gaudet, P; Michel, PA; Zahn-Zabal, M; Britan, A; Cusin, I; Domagalski, M; Duek, PD; Gateau, A; Gleizes, A; Hinard, V; de Laval, VR; Lin, J; Nikitin, F; Schaeffer, M; Teixeira, D; Lane, L; Bairoch, A (29 November 2016). "The neXtProt knowledgebase on human proteins: 2017 update". Nucleic Acids Research. 45 (D1): D177–D182. doi:10.1093/nar/gkw1062. PMC 5210547. PMID 27899619.
^Lane Lydie (2012). "neXtProt: a knowledge platform for human proteins". Nucleic Acids Research. 40 (Database issue): D76–D83. doi:10.1093/nar/gkr1179. PMC 3245017. PMID 22139911.
in diseases. The major part of the information in neXtProt is obtained from the UniProt Swiss-Prot database but it is complemented by data originating...
databases cross-referenced in the UniProtKB. Most of these databases are cross-referenced with UniProt / UniProtKB so that identifiers can be mapped to...
international standing, including UniProtKB/Swiss-Prot (curated protein sequence database providing a high level of annotation), neXtProt (human-centric protein knowledge...
informatics are the responsibility of Lydie Lane at SIB, Geneva, Switzerland (NeXtProt). All data generated as part of HPP contributions are deposited to one...
directed by himself and Lydie Lane, he is involved in the development of neXtProt a resource which aims to provide life scientists with a broad spectrum...
Zhi Sun and Dave Campbell. Human proteome project Human Protein Atlas NeXtProt PeptideAtlas web site (www.peptideatlas.org) Desiere, Frank; Deutsch, Eric...
detections of proteins with ultra low concentrations. Databases such as neXtprot and UniProt are central resources for human proteomic data. Metabolome Cytome...
Biotechnology Information, U.S. National Library of Medicine. "NCBI: Gene". "NeXtProt". "NCBI". "NCBI: Gene". "GeneCards". "GenBank: The Human Gene Compendium"...
FAM166B". Gaudet, P; Argout-Put, G; Cusin, I; et al. (December 3, 2013). "neXtProt: Organizing Protein Knowledge in the Context of Human Proteome Projects"...
[Homo sapiens]". National Center for Bioinformatics (NCBI). "C11orf97". neXtProt. SIB Swiss Institute of Bioinformatics. Retrieved 2023-12-07. "DISEASES...
the original on 2016-06-02. Retrieved 2022-02-13. "TMEM81 - Proteomics". neXtProt. Swiss Institute of Bioinformatics. "Protter". ETH Zurich Wollscheid Lab...
development of community resources such as UniProtKB/Swiss-Prot knowledgebase, PROSITE, ENZYME, and neXtProt. 2017 Sir Shankar Balasubramanian and David...
L (December 2018). "Exploring the Uncharacterized Human Proteome Using neXtProt". Journal of Proteome Research. 17 (12): 4211–4226. doi:10.1021/acs.jproteome...
"C16orf13 - UPF0585 protein C16orf13 - human protein (Identifiers)". Nextprot.org. Retrieved 2012-05-18. "Breast Cancer Database". Itb.cnr.it. Retrieved...
Bioinformatics. (2018, September 3). PROB1 - Proteomics. Retrieved from https://www.nextprot.org/entry/NX_E7EW31/proteomics The Human Protein Atlas. (2015). PROB1....
Post-translational Modifications". flipper.diff.org. University of Turin. "Nextprot:TMEM261 » Transmembrane protein 261". Dash A, et al. (2002). "Changes in...
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