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Lysine information


Lysine

Skeletal formula of L-lysine
Ball-and-stick model[1]
Space-filling model[1]
Names
IUPAC names
L-lysine
D-lysine
Systematic IUPAC name
(2S)-2,6-Diaminohexanoic acid (L-lysine) (2R)-2,6-Diaminohexanoic acid (D-lysine)
Other names
Lysine, D-lysine, L-lysine, LYS, h-Lys-OH
Identifiers
CAS Number
  • 70-54-2 DL checkY
  • 56-87-1 L checkY
  • 923-27-3 D checkY
3D model (JSmol)
  • Interactive image
  • Zwitterion: Interactive image
  • Protonated zwitterion: Interactive image
ChEBI
  • CHEBI:25094 checkY
ChEMBL
  • ChEMBL28328 checkY
ChemSpider
  • 843 checkY
  • 5747 L checkY
ECHA InfoCard 100.000.673 Edit this at Wikidata
IUPHAR/BPS
  • 724
KEGG
  • C16440 checkY
PubChem CID
  • 866
UNII
  • AI4RT59273 DL checkY
  • K3Z4F929H6 L checkY
  • 3HQ6U6424Q D checkY
InChI
  • InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10) checkY
    Key: KDXKERNSBIXSRK-UHFFFAOYSA-N checkY
  • InChI=1/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)
    Key: KDXKERNSBIXSRK-UHFFFAOYAY
SMILES
  • C(CCN)C[C@@H](C(=O)O)N
  • Zwitterion: C(CC[NH3+])C[C@@H](C(=O)[O-])N
  • Protonated zwitterion: C(CC[NH3+])C[C@@H](C(=O)[O-])[NH3+]
Properties
Chemical formula
C6H14N2O2
Molar mass 146.190 g·mol−1
Solubility in water
1.5 kg/L
Pharmacology
ATC code
B05XB03 (WHO)
Supplementary data page
Lysine (data page)
Except where otherwise noted, data are given for materials in their standard state (at 25 °C [77 °F], 100 kPa).
Infobox references

Lysine (symbol Lys or K)[2] is an α-amino acid that is a precursor to many proteins. It contains an α-amino group (which is in the protonated −NH+3 form when dissolved in water), an α-carboxylic acid group (which is in the deprotonated −COO form when dissolved in water), and a side chain lysyl ((CH2)4NH2), classifying it as a basic, charged (at physiological pH), aliphatic amino acid. It is encoded by the codons AAA and AAG. Like almost all other amino acids, the α-carbon is chiral and lysine may refer to either enantiomer or a racemic mixture of both. For the purpose of this article, lysine will refer to the biologically active enantiomer L-lysine, where the α-carbon is in the S configuration.

The human body cannot synthesize lysine. It is essential in humans and must therefore be obtained from the diet. In organisms that synthesise lysine, two main biosynthetic pathways exist, the diaminopimelate and α-aminoadipate pathways, which employ distinct enzymes and substrates and are found in diverse organisms. Lysine catabolism occurs through one of several pathways, the most common of which is the saccharopine pathway.

Lysine plays several roles in humans, most importantly proteinogenesis, but also in the crosslinking of collagen polypeptides, uptake of essential mineral nutrients, and in the production of carnitine, which is key in fatty acid metabolism. Lysine is also often involved in histone modifications, and thus, impacts the epigenome. The ε-amino group often participates in hydrogen bonding and as a general base in catalysis. The ε-ammonium group (−NH+3) is attached to the fourth carbon from the α-carbon, which is attached to the carboxyl (−COOH) group.[3]

Due to its importance in several biological processes, a lack of lysine can lead to several disease states including defective connective tissues, impaired fatty acid metabolism, anaemia, and systemic protein-energy deficiency. In contrast, an overabundance of lysine, caused by ineffective catabolism, can cause severe neurological disorders.

Lysine was first isolated by the German biological chemist Ferdinand Heinrich Edmund Drechsel in 1889 from hydrolysis of the protein casein,[4] and thus named it Lysin, from Greek λύσις (lysis) 'loosening'.[5][6] In 1902, the German chemists Emil Fischer and Fritz Weigert determined lysine's chemical structure by synthesizing it.[7]

The one-letter symbol K was assigned to lysine for being alphabetically nearest, with L being assigned to the structurally simpler leucine, and M to methionine.[8]

  1. ^ a b Williams, P. A.; Hughes, C. E.; Harris, K. D. M (2015). "L-Lysine: Exploiting Powder X-ray Diffraction to Complete the Set of Crystal Structures of the 20 Directly Encoded Proteinogenic Amino Acids". Angew. Chem. Int. Ed. 54 (13): 3973–3977. doi:10.1002/anie.201411520. PMID 25651303.
  2. ^ "IUPAC-IUB Joint Commission on Biochemical Nomenclature (JCBN). Nomenclature and symbolism for amino acids and peptides. Recommendations 1983". Biochemical Journal. 219 (2): 345–373. 15 April 1984. doi:10.1042/bj2190345. PMC 1153490. PMID 6743224.
  3. ^ Lysine. The Biology Project, Department of Biochemistry and Molecular Biophysics, University of Arizona.
  4. ^ Drechsel E (1889). "Zur Kenntniss der Spaltungsprodukte des Caseïns" [[Contribution] to [our] knowledge of the cleavage products of casein]. Journal für Praktische Chemie. 2nd series (in German). 39: 425–429. doi:10.1002/prac.18890390135. On p. 428, Drechsel presented an empirical formula for the chloroplatinate salt of lysine – C8H16N2O2Cl2·PtCl4 + H2O – but he later admitted that this formula was wrong because the salt's crystals contained ethanol instead of water. See: Drechsel E (1891). "Der Abbau der Eiweissstoffe" [The disassembly of proteins]. Archiv für Anatomie und Physiologie (in German): 248–278.; Drechsel E (1877). "Zur Kenntniss der Spaltungsproducte des Caseïns" [Contribution] to [our] knowledge of the cleavage products of casein] (in German): 254–260. From p. 256:] " … die darin enthaltene Base hat die Formel C6H14N2O2. Der anfängliche Irrthum ist dadurch veranlasst worden, dass das Chloroplatinat nicht, wie angenommen ward, Krystallwasser, sondern Krystallalkohol enthält, … " ( … the base [that's] contained therein has the [empirical] formula C6H14N2O2. The initial error was caused by the chloroplatinate containing not water in the crystal (as was assumed), but ethanol … ) {{cite journal}}: Cite journal requires |journal= (help)
  5. ^ Vickery, Hubert Bradford.; Schmidt, Carl L. A. (1 October 1931). "The History of the Discovery of the Amino Acids". Chemical Reviews. 9 (2): 169–318. doi:10.1021/cr60033a001. ISSN 0009-2665.
  6. ^ Drechsel E (1891). "Der Abbau der Eiweissstoffe" [The disassembly of proteins]. Archiv für Anatomie und Physiologie (in German): 248–278.; Fischer E (1891). "Ueber neue Spaltungsproducte des Leimes" [On new cleavage products of gelatin] (in German): 465–469. From p. 469:] " … die Base C6H14N2O2, welche mit dem Namen Lysin bezeichnet werden mag, … " ( … the base C6H14N2O2, which may be designated with the name "lysine", … ) [Note: Ernst Fischer was a graduate student of Drechsel.] {{cite journal}}: Cite journal requires |journal= (help)
  7. ^ Fischer E, Weigert F (1902). "Synthese der α,ε – Diaminocapronsäure (Inactives Lysin)" [Synthesis of α,ε-diaminohexanoic acid ([optically] inactive lysine)]. Berichte der Deutschen Chemischen Gesellschaft (in German). 35 (3): 3772–3778. doi:10.1002/cber.190203503211.
  8. ^ Saffran, M. (April 1998). "Amino acid names and parlor games: from trivial names to a one-letter code, amino acid names have strained students' memories. Is a more rational nomenclature possible?". Biochemical Education. 26 (2): 116–118. doi:10.1016/S0307-4412(97)00167-2.

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Lysine

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Lysine (symbol Lys or K) is an α-amino acid that is a precursor to many proteins. It contains an α-amino group (which is in the protonated −NH+3 form when...

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Acetyllysine

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acetylated lysine) is an acetyl-derivative of the amino acid lysine. There are multiple forms of acetyllysine: this article is about N-ε-acetyl-L-lysine; the...

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Histone

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In biology, histones are highly basic proteins abundant in lysine and arginine residues that are found in eukaryotic cell nuclei and in most Archaeal phyla...

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Polylysine

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either L-lysine or D-lysine. "L" and "D" refer to the chirality at lysine's central carbon. This results in poly-L-lysine (PLL) and poly-D-lysine (PDL) respectively...

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Lysine acetylsalicylate

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Lysine acetylsalicylate, also known as aspirin DL-lysine or lysine aspirin, is a more soluble form of acetylsalicylic acid (aspirin). As with aspirin itself...

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Lysine decarboxylase

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The enzyme Lysine decarboxylase (EC 4.1.1.18) converts lysine to cadaverine. Abbreviated as Ldc, the enzyme is involved in acid-stress response in Enterobacteria...

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Lysine racemase

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a lysine racemase (EC 5.1.1.5) is an enzyme that catalyzes the chemical reaction L-lysine ⇌ D-lysine Hence, this enzyme has one substrate, L-lysine, and...

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Deoxyhypusine synthase

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spermidine:eIF5A-lysine 4-aminobutyltransferase (propane-1,3-diamine-forming)) is an enzyme with systematic name (eIF5A-precursor)-lysine:spermidine...

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KDM1A

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Lysine-specific histone demethylase 1A (LSD1) also known as lysine (K)-specific demethylase 1A (KDM1A) is a protein that in humans is encoded by the KDM1A...

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Hydroxylysine

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post-translational hydroxy modification of lysine. It is most widely known as a component of collagen. It is biosynthesized from lysine via oxidation by lysyl hydroxylase...

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Vasopressin

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formation, critical for pair bond formation. A very similar substance, lysine vasopressin (LVP) or lypressin, has the same function in pigs and its synthetic...

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Biocytin

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compound that is an amide formed from the vitamin biotin and the amino acid L-lysine. As an intermediate in the metabolism of biotin, biocytin occurs naturally...

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Lysine riboswitch

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Lysine riboswitch is a metabolite binding RNA element found within certain messenger RNAs that serve as a precision sensor for the amino acid lysine....

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Ibuprofen

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ibuprofen; the lysine salt is used because it is more water-soluble. Ibuprofen lysine is sold for rapid pain relief; given in the form of its lysine salt, absorption...

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Histone deacetylase

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class of enzymes that remove acetyl groups (O=C-CH3) from an ε-N-acetyl lysine amino acid on both histone and non-histone proteins. HDACs allow histones...

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Lysine iron agar

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Lysine iron agar or LIA is a differential media used to distinguish bacteria that are able to decarboxylate lysine and/or produce hydrogen sulfide from...

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