Database of human and mouse transcription factor binding sites
HOCOMOCO
Content
Description
Curated collection of binding models for human and mouse transcription factors
Data types captured
Transcription factor binding profiles
Organisms
Homo sapiens, Mus musculus
laboratory: autosome.org
author: Vorontsov, Makeev, Kulakovskiy
Contact
Primary citation
Vorontsov et al[1]
Access
Website
HOCOMOCO
HOCOMOCO[1][2][3][4] is an open-access database providing curated and benchmarked binding motifs of human and mouse transcription factors. It captures the following data types: Homo sapiens (human) and Mus musculus (mouse) transcription factors, their DNA binding site motifs, and motif subtypes.
^ abVorontsov, Ilya E; Eliseeva, Irina A; Zinkevich, Arsenii; Nikonov, Mikhail; Abramov, Sergey; Boytsov, Alexandr; Kamenets, Vasily; Kasianova, Alexandra; Kolmykov, Semyon; Yevshin, Ivan S; Favorov, Alexander; Medvedeva, Yulia A; Jolma, Arttu; Kolpakov, Fedor; Makeev, Vsevolod J; Kulakovskiy, Ivan V (16 November 2023). "HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors". Nucleic Acids Research. 52 (D1): D154–D163. doi:10.1093/nar/gkad1077. ISSN 0305-1048. PMC 10767914. PMID 37971293.
^Kulakovskiy, Ivan V.; Vorontsov, Ilya E.; Yevshin, Ivan S.; Sharipov, Ruslan N.; Fedorova, Alla D.; Rumynskiy, Eugene I.; Medvedeva, Yulia A.; Magana-Mora, Arturo; Bajic, Vladimir B.; Papatsenko, Dmitry A.; Kolpakov, Fedor A.; Makeev, Vsevolod J. (4 January 2018). "HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis". Nucleic Acids Research. 46 (D1): 252–D259. doi:10.1093/nar/gkx1106. ISSN 1362-4962. PMC 5753240. PMID 29140464.
^Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, et al. (January 2016). "HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models". Nucleic Acids Research. 44 (D1): D116–D125. doi:10.1093/nar/gkv1249. PMC 4702883. PMID 26586801.
^Kulakovskiy, Ivan V.; Medvedeva, Yulia A.; Schaefer, Ulf; Kasianov, Artem S.; Vorontsov, Ilya E.; Bajic, Vladimir B.; Makeev, Vsevolod J. (1 January 2013). "HOCOMOCO: a comprehensive collection of human transcription factor binding sites models". Nucleic Acids Research. 41 (Database issue): 195–202. doi:10.1093/nar/gks1089. ISSN 1362-4962. PMC 3531053. PMID 23175603.
HOCOMOCO is an open-access database providing curated and benchmarked binding motifs of human and mouse transcription factors. It captures the following...
Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, et al. (January 2016). "HOCOMOCO: expansion and enhancement of the collection of transcription factor binding...
Public [10] DBSD Drosophila species Literature/Expert curation Public [11] HOCOMOCO Human, Mouse Literature/Expert curation Public [12],[13] MethMotif Human...
at http://jaspar.genereg.net/. TRANSFAC – Transcription Factor Database HOCOMOCO - HOmo sapiens COmprehensive MOdel COllection PAZAR - Database with focus...