an open-access database of transcription factor binding profiles
Data types captured
Eukaryotic transcription factors, their binding sites and binding profiles
Organisms
eukaryotes
Contact
Authors
Sandelin, A
Primary citation
Sandelin, A. et al. (2004) [1]
Release date
2004
Access
Website
http://jaspar.genereg.net/
JASPAR is an open access and widely used database of manually curated, non-redundant transcription factor (TF) binding profiles stored as position frequency matrices (PFM) and transcription factor flexible models (TFFM)[2] for TFs from species in six taxonomic groups. From the supplied PFMs, users may generate position-specific weight matrices (PWM). The JASPAR database was introduced in 2004. There were seven major updates and new releases in 2006, 2008, 2010, 2014, 2016, 2018, 2020 and 2022, which is the latest release of JASPAR.[3][4][5][6][7][8][9]
[10]
^Sandelin, A; Alkema, W; Engström, P; Wasserman, WW; Lenhard, B (1 January 2004). "JASPAR: an open-access database for eukaryotic transcription factor binding profiles". Nucleic Acids Research. 32 (Database issue): D91-4. doi:10.1093/nar/gkh012. PMC 308747. PMID 14681366.
^Mathelier, A; Wasserman, W.W. (5 September 2013). "The Next Generation of Transcription Factor Binding Site Prediction". PLOS Computational Biology. 9 (9): e1003214. Bibcode:2013PLSCB...9E3214M. doi:10.1371/journal.pcbi.1003214. PMC 3764009. PMID 24039567.
^Vlieghe, D; Sandelin, A; De Bleser, PJ; Vleminckx, K; Wasserman, WW; van Roy, F; Lenhard, B (1 January 2006). "A new generation of JASPAR, the open-access repository for transcription factor binding site profiles". Nucleic Acids Research. 34 (Database issue): D95-7. doi:10.1093/nar/gkj115. PMC 1347477. PMID 16381983.
^Bryne, JC; Valen, E; Tang, MH; Marstrand, T; Winther, O; da Piedade, I; Krogh, A; Lenhard, B; Sandelin, A (January 2008). "JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update". Nucleic Acids Research. 36 (Database issue): D102-6. doi:10.1093/nar/gkm955. PMC 2238834. PMID 18006571.
^Mathelier, A; Fornes, O; Arenillas, DJ; Chen, CY; Denay, G; Lee, J; Shi, W; Shyr, C; Tan, G; Worsley-Hunt, R; Zhang, AW; Parcy, F; Lenhard, B; Sandelin, A; Wasserman, WW (4 January 2016). "JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles". Nucleic Acids Research. 44 (D1): D110-5. doi:10.1093/nar/gkv1176. PMC 4702842. PMID 26531826.
^Khan, Aziz; Fornes, Oriol; Stigliani, Arnaud; Gheorghe, Marius; Castro-Mondragon, Jaime A.; van der Lee, Robin; Bessy, Adrien; Chèneby, Jeanne; Kulkarni, Shubhada R.; Tan, Ge; Baranasic, Damir; Arenillas, David J.; Sandelin, Albin; Vandepoele, Klaas; Lenhard, Boris; Ballester, Benoît; Wasserman, Wyeth W.; Parcy, François; Mathelier, Anthony (13 November 2017). "JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework". Nucleic Acids Research. 46 (D1): D260–D266. doi:10.1093/nar/gkx1126. PMC 5753243. PMID 29140473.
^Fornes, Oriol; Castro-Mondragon, Jaime A.; Khan, Aziz; van der Lee, Robin; Zhang, Xi; Richmond, Phillip A.; Modi, Bhavi P.; Correard, Solenne; Gheorghe, Marius; Baranašić, Damir; Santana-Garcia, Walter; Tan, Ge; Chèneby, Jeanne; Ballester, Benoit; Parcy, François; Sandelin, Albin; Lenhard, Boris; Wasserman, Wyeth W.; Mathelier, Anthony (8 January 2020). "JASPAR 2020: update of the open-access database of transcription factor binding profiles". Nucleic Acids Research. 48 (D1): D87–D92. doi:10.1093/nar/gkz1001. PMC 7145627. PMID 31701148.
^Xuan Lin QX, Sian S, An O, Thieffry D, Jha S, Benoukraf T (January 2019). "MethMotif: an integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles". Nucleic Acids Research. 47 (D1): D145–D154. doi:10.1093/nar/gky1005. PMC 6323897. PMID 30380113.
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