Compression of genomic sequencing data information
Methods of compressing data tailored specifically for genomic data
High-throughput sequencing technologies have led to a dramatic decline of genome sequencing costs and to an astonishingly rapid accumulation of genomic data. These technologies are enabling ambitious genome sequencing endeavours, such as the 1000 Genomes Project and 1001 (Arabidopsis thaliana) Genomes Project. The storage and transfer of the tremendous amount of genomic data have become a mainstream problem, motivating the development of high-performance compression tools designed specifically for genomic data. A recent surge of interest in the development of novel algorithms and tools for storing and managing genomic re-sequencing data emphasizes the growing demand for efficient methods for genomic data compression.
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High-throughput sequencing technologies have led to a dramatic decline of genome sequencing costs and to an astonishingly rapid accumulation ofgenomicdata. These...
software Other Compressionofgenomicsequencingdata Bioinformatics workflow management system List of genetic engineering software List of systems biology...
collaborative data collection of the functional elements of the human genome that uses next-generation DNA-sequencing technologies and genomic tiling arrays...
Sara; Posada, David (2016). "A comparison of tools for the simulation ofgenomic next-generation sequencingdata". Nature Reviews Genetics. 17 (8): 459–69...
software package for compressing genomic files, uses an extensible context-based model. Benchmarks of FASTA file compression algorithms have been reported...
provides a public repository for DNA sequencingdata, especially the "short reads" generated by high-throughput sequencing, which are typically less than 1...
Pinho, A. J.; Ferreira, P. J. S. G. (2016). Efficient compressionofgenomic sequences. DataCompression Conference. Snowbird, Utah. [1][dead link] "Blodbank...
requirements and speed up analysis and transmission ofsequencingdata. Both lossless and lossy compression are recently being considered in the literature...
global science initiative established in 2008 to provide access to genomicdataof influenza viruses. The database was expanded to include the coronavirus...
Birney, E. (2011). "Efficient storage of high throughput DNA sequencingdata using reference-based compression". Genome Research. 21 (5): 734–740. doi:10...
ofdata produced by the Maxam-Gilbert and Sanger DNA sequencing techniques developed in the late 1970s. The first software used to analyze sequencing...
the latter infers peptide sequences without knowledge ofgenomicdata. De novo peptide sequencing algorithms are, in general, based on the approach proposed...
huge amount ofdata (represented by DNA sequences and annotations) accessible in genomic databases. By applying data mining algorithms, the data can be used...
lossless data compressor that provides higher compression is AC2. AC2 mixes various context models using Neural Networks and encodes the data using arithmetic...
collection of symptoms and signs associated with nerve compressionof the median nerve at the carpal tunnel. Most CTS is related to idiopathic compressionof the...
sorting, indexing, data extraction and format conversion. SAM files can be very large (tens of Gigabytes is common), so compression is used to save space...
short read sequencing alignments. This is achieved through the manipulation of de Bruijn graphs for genomic sequence assembly via the removal of errors and...
integrating genomic and epidemiological data to reconstruct transmission events. However, recent research has explored the possibility of deducing transmission...
2007 Next-generation sequencing (NGS) and other high throughput methods create huge data sets (called "big data") in the region of 100 terabytes upwards...
research needs of himself and his colleagues, but also out of concern that the data might be made proprietary via patents by Celera Genomics. In their close...
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