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CellML information


CellML is an XML based markup language for describing mathematical models. Although it could theoretically describe any mathematical model, it was originally created with the Physiome Project in mind, and hence used primarily to describe models relevant to the field of biology. This is reflected in its name CellML, although this is simply a name, not an abbreviation.[1] CellML is growing in popularity as a portable description format for computational models, and groups throughout the world are using CellML for modelling or developing software tools based on CellML. CellML is similar to Systems Biology Markup Language SBML but provides greater scope for model modularity and reuse, and is not specific to descriptions of biochemistry.

  1. ^ "[cellml-discussion] Expanding the CellML abbreviation".

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CellML

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energy etc. "[cellml-discussion] Expanding the CellML abbreviation". CellML homepage IUPS Physiome Project Physiome JAPAN Project Interactive cell models Java...

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Schneider 2 cells

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culturing insect cell lines with many of them suitable for culturing S2 cells. The S2 cells have been shown to grow up to 5.1×107 cells/ml in serum free...

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List of systems biology modeling software

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exchanging models of biological cellular processes. Some tools also support CellML, a standard used for representing physiological processes. The advantage...

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BioModels

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information from other resources. Modellers can submit the models in SBML and CellML. Models can subsequently be downloaded in SBML, VCML Archived 2006-12-09...

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Modelling biological systems

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BioModels. Other markup languages with different emphases include BioPAX and CellML. Creating a cellular model has been a particularly challenging task of systems...

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Pathophysiology

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count falls below 200 cells/ml of blood, the HIV host has progressed to AIDS, a condition characterized by deficiency in cell-mediated immunity and the...

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Eukaryote

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-⁠əts) constitute the domain of Eukarya or Eukaryota, organisms whose cells have a membrane-bound nucleus. All animals, plants, fungi, and many unicellular...

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Hollow fiber bioreactor

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area of the cartridge considerably. As a result, cells can fill up the EC space to densities >108 cells/ml. However, the cartridge itself takes up a very...

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SyncML

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SyncML (Synchronization Markup Language) is the former name for a platform-independent information synchronization standard. The project is currently referred...

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Bacterial cell structure

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coli (at an optical density of 1.0, corresponding to c. 109 cells/ml) yields about 1 g wet cell mass. Small size is extremely important because it allows...

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Antarctic Plateau

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the environment inhospitable to life. Microbial abundance is low (<103 cells/ml of snowmelt). The microbial community is mainly composed of members of...

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List of biomedical cybernetics software

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Systems Biology Markup Language (SBML) Biological Pathway Exchange (BioPAX) CellML Minimum Information About a Simulation Experiment (MIASE) Minimum information...

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AutomationML

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AutomationML (Automation Markup Language) is a neutral data format based on XML for the storage and exchange of plant engineering information, which is...

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T cell

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cells in central CD4(+) T cell tolerance" (PDF). Nature Immunology. 11 (6): 512–519. doi:10.1038/ni.1874. PMID 20431619. S2CID 33154019. Pekalski ML,...

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Dunaliella

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They were found in densities of 200–1000 cells/ml and sometimes in peak densities of 3000–10000 cells/ml. At times they were even found to be more abundant...

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Cell wall

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A cell wall is a structural layer that surrounds some cell types, found immediately outside the cell membrane. It can be tough, flexible, and sometimes...

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List of XML markup languages

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communications platform CellML: a language describing mathematical models Channel Definition Format Chemical Markup Language ClaML : Classification Markup...

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Minimum information required in the annotation of models

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must be encoded in a public, standardized, machine-readable format (SBML, CellML, GENESIS, ...). The model file must be valid with respect to its encoding...

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COMBINE

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activity are the BioPAX standards language, SBGN, SBML and the SED-ML and CellML markup languages. The associated standardisation efforts are MIRIAM...

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Systems Biology Ontology

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concern drove the community to design common data formats, such as SBML and CellML. SBML is now largely accepted and used in the field. However, as important...

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Physiomics

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languages are freely available for use in software development, such as CellML, NeuroML, and SBML. Genomics Omics Phenomics Proteomics Bailey, J.E (1991)....

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Button cell

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different prefix not given in the IEC standard, for example some ML and LiR button cells use rechargeable lithium technology. For rechargeables, the IEC...

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Complete blood count

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Turgeon, ML (2016). p. 309. Harmening, DM (2009). pp. 2–3. Green, R; Wachsmann-Hogiu, S (2015). "Development, history, and future of automated cell counters"...

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NeuroML

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Levels of NeuroML defined: Level 1 focuses on the anatomical aspects of cells and consists of a schema for Metadata and the main MorphML schema. Tools...

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Stem cell

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established use of stem cells. Valli H, Phillips BT, Shetty G, Byrne JA, Clark AT, Meistrich ML, Orwig KE (January 2014). "Germline stem cells: toward the regeneration...

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