Bioinformatics workflow management system information
"IDBS" redirects here. For other uses, see IDB.
This article may contain excessive or irrelevant examples. Please help improve the article by adding descriptive text and removing less pertinent examples.(February 2012)
A bioinformatics workflow management system is a specialized form of workflow management system designed specifically to compose and execute a series of computational or data manipulation steps, or a workflow, that relate to bioinformatics.
There are currently many different workflow systems. Some have been developed more generally as scientific workflow systems for use by scientists from many different disciplines like astronomy and earth science. All such systems are based on an abstract representation of how a computation proceeds in the form of a directed graph, where each node represents a task to be executed and edges represent either data flow or execution dependencies between different tasks. Each system typically provides a visual front-end, allowing the user to build and modify complex applications with little or no programming expertise.[1][2][3]
^Oinn, T.; Greenwood, M.; Addis, M.; Alpdemir, M. N.; Ferris, J.; Glover, K.; Goble, C.; Goderis, A.; Hull, D.; Marvin, D.; Li, P.; Lord, P.; Pocock, M. R.; Senger, M.; Stevens, R.; Wipat, A.; Wroe, C. (2006). "Taverna: Lessons in creating a workflow environment for the life sciences" (PDF). Concurrency and Computation: Practice and Experience. 18 (10): 1067–1100. doi:10.1002/cpe.993. S2CID 10219281.
^Yu, J.; Buyya, R. (2005). "A taxonomy of scientific workflow systems for grid computing". ACM SIGMOD Record. 34 (3): 44. CiteSeerX 10.1.1.63.3176. doi:10.1145/1084805.1084814. S2CID 538714.
^Curcin, V.; Ghanem, M. (2008). "Scientific workflow systems - can one size fit all?". 2008 Cairo International Biomedical Engineering Conference. pp. 1–9. doi:10.1109/CIBEC.2008.4786077. ISBN 978-1-4244-2694-2. S2CID 1885579.
and 22 Related for: Bioinformatics workflow management system information
Standard Objects Workflow Objects WorkflowBioinformaticsworkflowmanagementsystems Business process automation Business process management Business process...
called a pipeline. A bioinformaticsworkflowmanagementsystem is a specialized scientific workflowsystem focused on bioinformatics. The simplest computerized...
extensible bioinformaticsworkflowmanagementsystems. A bioinformaticsworkflowmanagementsystem is a specialized form of a workflowmanagementsystem designed...
data Bioinformaticsworkflowmanagementsystem List of genetic engineering software List of systems biology visualization software List of systems biology...
differs from many of the other bioinformaticsworkflowmanagementsystems in that it separates the structure of the workflow model from its model of computation...
Nextflow is a scientific workflowsystem predominantly used for bioinformatic data analyses. It imposes standards on how to programmatically author a sequence...
feature of Workflow Designer, relative to other bioinformaticsworkflowmanagementsystems is that workflows are executed on a local computer. It helps to...
Net workflow platform and workflowsystem. Over the years the system evolved to address applications in many other areas including bioinformatics, cheminformatics...
Institute of Molecular Cell Biology and Genetics Topic: Bioinformaticsworkflowmanagementsystem, e.g. for Genomics, Proteomics, Metabolomics, Bioimaging...
the composition and enactment of bioinformaticsworkflows". Bioinformatics. 20 (17): 3045–54. doi:10.1093/bioinformatics/bth361. PMID 15201187. Oinn T,...
cloud. High performance computing e-Science Workflow Web services Bioinformaticsworkflowmanagementsystems OnlineHPC home page (Archive of http://onlinehpc...
thaliana, and several others described in the references. Bioinformaticsworkflowmanagementsystems BioBIKE Project home page Elhai, J.; Taton, A.; Massar...
learning in bioinformatics is the application of machine learning algorithms to bioinformatics, including genomics, proteomics, microarrays, systems biology...
VisTrails is a scientific workflowmanagementsystem developed at the Scientific Computing and Imaging Institute at the University of Utah that provides...
Also available as an iOS app. Cascade, a Web-based workflowmanagement tool that controls workflow among different departments using the Electronic lab...
(2003). "MyGrid: Personalised bioinformatics on the information grid". Bioinformatics. 19: i302–i304. doi:10.1093/bioinformatics/btg1041. PMID 12855473. Stevens...
practices. Users can explore different workflows and gain insights into effective data analytics and workflowmanagement. The first KNIME Summit was held in...
easily integrated into a production system. A Set of RESTful APIs which exposes the capabilities of File Manager, Workflow Manager and Resource manager components...
Global Information