Global InformationNextflow information
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| Original author(s) | Paolo Di Tommaso |
|---|---|
| Developer(s) | Seqera Labs, Centre for Genomic Regulation |
| Initial release | April 9, 2013 |
| Stable release | v23.10.1
/ January 12, 2024 |
| Preview release | v24.02.0-edge
/ March 9, 2024 |
| Repository | https://github.com/nextflow-io/nextflow |
| Written in | Groovy, Java |
| Operating system | Linux, macOS, WSL |
| Type | Scientific workflow system, Dataflow programming, Big data |
| License | Apache License 2.0 |
| Website | nextflow |
Nextflow is a scientific workflow system predominantly used for bioinformatic data analyses. It imposes standards on how to programmatically author a sequence of dependent compute steps and enables their execution on various local and cloud resources.[1][2] Nextflow was conceived at the Centre for Genomic Regulation in Barcelona, Spain, but has since found world-wide adoption in biomedical and genomics research facilities and laboratories.
- ^ Strozzi, Francesco; Janssen, Roel; Wurmus, Ricardo; Crusoe, Michael R.; Githinji, George; Di Tommaso, Paolo; Belhachemi, Dominique; Möller, Steffen; Smant, Geert; De Ligt, Joep; Prins, Pjotr (2019). "Scalable Workflows and Reproducible Data Analysis for Genomics". Evolutionary Genomics. Methods in Molecular Biology. Vol. 1910. pp. 723–745. doi:10.1007/978-1-4939-9074-0_24. ISBN 978-1-4939-9073-3. PMC 7613310. PMID 31278683.
- ^ Gao, Mingxuan; Ling, Mingyi; Tang, Xinwei; Wang, Shun; Xiao, Xu; Qiao, Ying; Yang, Wenxian; Yu, Rongshan (2021). "Comparison of high-throughput single-cell RNA sequencing data processing pipelines". Briefings in Bioinformatics. 22 (3). doi:10.1093/bib/bbaa116. PMID 34020539.