Predicted secondary structure and sequence conservation of SdsR_RyeB
Identifiers
Symbol
SdsR_RyeB
Rfam
RF00111
Other data
RNA type
Gene; sRNA
Domain(s)
Bacteria
SO
SO:0000655
PDB structures
PDBe
The SdsR/RyeB RNA is a non-coding RNA that was identified in a large scale screen of E. coli.[1] The exact 5′ and 3′ ends of this RNA are uncertain. This RNA overlaps the SraC/RyeA RNA on the opposite strand suggesting that the two may act in a concerted manner. It is transcribed by general stress factor σs and is most highly expressed in stationary phase. SdsR/RyeB RNA interacts with Hfq.
The homologous sRNA in S. enterica was shown to regulate synthesis of major porin OmpD.[2] A study using Salmonella identified 20 targets of this sRNA including transcriptional regulator, CRP, global DNA-binding factors, StpA and HupB, the antibiotic transporter protein, TolC, and the RtsA/B two-component system (TCS), and validated their post-transcriptional control by SdsR/RyeB RNA.[3]
^Wassarman KM, Repoila F, Rosenow C, Storz G, Gottesman S (July 2001). "Identification of novel small RNAs using comparative genomics and microarrays". Genes & Development. 15 (13): 1637–1651. doi:10.1101/gad.901001. PMC 312727. PMID 11445539.
^Fröhlich KS, Papenfort K, Berger AA, Vogel J (April 2012). "A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD". Nucleic Acids Research. 40 (8): 3623–3640. doi:10.1093/nar/gkr1156. PMC 3333887. PMID 22180532.
^Fröhlich KS, Haneke K, Papenfort K, Vogel J (December 2016). "The target spectrum of SdsR small RNA in Salmonella". Nucleic Acids Research. 44 (21): 10406–10422. doi:10.1093/nar/gkw632. PMC 5137417. PMID 27407104.
SdsR/RyeBRNA is a non-coding RNA that was identified in a large scale screen of E. coli. The exact 5′ and 3′ ends of this RNA are uncertain. This RNA overlaps...
and yobF. RydBRNA RyhBRNARyeBRNA Wassarman, KM; Repoila F; Rosenow C; Storz G; Gottesman S (2001). "Identification of novel small RNAs using comparative...
RNA is unknown. RyhBRNARyeBRNARyeE RNA Wassarman KM, Repoila F, Rosenow C, Storz G, Gottesman S (July 2001). "Identification of novel small RNAs using...
of catalytic properties of RNA" 1989 Thomas R. Cech Chicago, Illinois, US "for their discovery of catalytic properties of RNA" 1987 Charles J. Pedersen...
the set of metabolic pathways that construct macromolecules like DNA or RNA from smaller units. These reactions require energy, known also as an endergonic...
positive-sense single-strand RNA genome approximately 8.5 to 12 kilobases in length, and can be either mono- or bipartite. The RNA serves as both the genome...
membrane transport proteins. Recent evidence indicates that mobile proteins and RNA are part of the plant's long-distance communication signaling system. Evidence...
of miRNA activity begins with the synthesis of pri-miRNA in the nucleus by RNA polymerase II which is then converted into pre-miRNA. This pre-miRNA exits...
to copy the DNA into RNA (See: Central dogma of molecular biology). The inaccessible DNA must be unwound to be transcribed into RNA. The mechanism by which...
Packaging of Genomic RNA by Retroviruses: An Ensemble of Viral and Host Factors. Viruses. 2016 Sep 20; 8(9). PMID 27657110. Rye-McCurdy T, Olson ED, Liu...
programmed cell death) and inhibit the synthesis of nucleic acids (DNA and RNA) and proteins, reducing the viability of cells. Experiments in vivo with...
HMS Seahawk (RNAS Culdrose, Cornwall) RNAS Predannack HMS Heron (RNAS Yeovilton, Somerset) RNAS Merryfield HMS Gannet (formerly known as RNAS Prestwick,...
mechanisms that regulate gene and protein expression in regards to microRNA, protein phosphorylation, and epigenetic controls. Hon, W. C.; Griffith,...
molecular biology methods, but have so far failed due to a lack of DNA or RNA. Sweating sickness first came to the attention of physicians at the beginning...
the messenger RNA levels for IL-6 and IL-1β in RAW264.7 cells; f) 4-octyl itaconate reduced the ability of LPS to raise the messenger RNA levels of IκBζ...
taxonomists to classify them as protists. Molecular phylogenies, inferred from rRNA sequences in ribosomes, suggest that the Chytrids are a basal group divergent...
PMID 12456750. Gill BS, Kimber G (April 1974). "The Giemsa C-banded karyotype of rye". Proceedings of the National Academy of Sciences of the United States of...
S2CID 410286. Jiang W, Zhou H, Bi H, Fromm M, Yang B, Weeks DP (November 2013). "Demonstration of CRISPR/Cas9/sgRNA-mediated targeted gene modification in Arabidopsis...
Barley stripe mosaic virus (BSMV), of genus Hordevirus, is an RNA viral plant pathogen whose main hosts are barley and wheat. The common symptoms for...
second domain is an N-glycosidase that cleaves nucleobases from ribosomal RNA, resulting in inhibition of protein synthesis and cell death. Lectins are...
for Basic Medical Research in 2003 for "pioneering studies on eukaryotic RNA polymerases and the general transcriptional machinery, which opened gene...
motility. It has since been reclassified to the order Bacteroidales due to 16s rRNA genome sequence analysis. Breznakibacter xylanolyticus forms orange to pink...
Global Information